Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_L03
         (901 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.61 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.3  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   7.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.9  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 706 PPXPXXXPXPPPPXXPP 756
           PP P   P P PP  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 25.0 bits (52), Expect = 0.81
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +3

Query: 462 NPPPXFFFFXXPPPXPPXXXLXAXPP-PPPPXXXXSXPPXPXXPPPPSP 605
           +PP        P   P    +   P  PP      + PP P  PP P P
Sbjct: 138 SPPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLP 186


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 549 GGGGGGAXXXXRXXGXGGGXXKKKK 475
           GGG GG     R  G GGG  KK++
Sbjct: 92  GGGRGGGRDGDR--GDGGGEEKKRE 114


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 530 APPPPPP 550
           APPPPPP
Sbjct: 730 APPPPPP 736



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 528 AXPPPPPP 551
           A PPPPPP
Sbjct: 730 APPPPPPP 737


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 739 PPXXPPXXPRGXPPPPP 789
           PP      P   PPPPP
Sbjct: 202 PPTEDCDVPSTIPPPPP 218



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 797 PPXXRXXXPPXPPPPPP 847
           PP      P   PPPPP
Sbjct: 202 PPTEDCDVPSTIPPPPP 218


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +3

Query: 537  PPPPPXXXXSXPPXPXXPPPP 599
            P  P     + PP P  P PP
Sbjct: 995  PDNPSREDCTKPPEPVTPAPP 1015


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = +3

Query: 570 PPXPXXPPPPSPXXXXXXPPXAAXXPP 650
           PP P   P P P       P  A   P
Sbjct: 392 PPEPVPTPEPQPTQTTESEPTQASEQP 418


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,443
Number of Sequences: 336
Number of extensions: 5292
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)