Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_L02
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.052
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    32   0.12 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    28   1.5  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   3.4  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   4.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   7.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 505 PKTKXARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPXTPS- 678
           P T  +     S P P   T+  TS S PP  NST + +T  V   + SST   P   S 
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPAST 322

Query: 679 NTTGTLSPP 705
           ++TGT S P
Sbjct: 323 SSTGTSSSP 331



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 499 VTPKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV-IAPXTP 675
           VTP       S  S PP   +T  T  S  P  +++ S  T   +  T +ST  + P  P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360

Query: 676 SNTTGTLSPP 705
             +T + S P
Sbjct: 361 PTSTSSTSTP 370



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = +1

Query: 499 VTPKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPXTPS 678
           VTP       S  S PP   +T  T  S  P  +++ S  T   +  T +ST   P TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412

Query: 679 NTTGTLSPPCT 711
               + S P T
Sbjct: 413 VPPTSSSTPLT 423



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 496 SVTPKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMT--VSSTVIAPX 669
           S  P T  +  +  S+PP   +T   + + PP + S+ S+        +   SS+ +   
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLST 389

Query: 670 TPSNTTGTLSPP 705
           + S TT T  PP
Sbjct: 390 STSCTTSTSIPP 401


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 559 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPXTPSNTTGTLSPPCT 711
           +T  TS   PP T+   ++ T        ++T + P T  NTT T +PP T
Sbjct: 63  STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTT 113



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 499 VTPKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPXTPS 678
           V P +     +  ++PP   T+  T+ + PP T+   ++ T        S+T + P T  
Sbjct: 70  VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127

Query: 679 NTTGTLSPPCT 711
             T T+ PP T
Sbjct: 128 VNTTTVVPPTT 138



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +1

Query: 538 SLPPCWKTTEFTSRSCPPRT--NST*SSITRKVLVMTVSSTVIAPXTPSNTTGTLSPPCT 711
           ++PP   +   T+ + PP T  NST + +     V T  +TV+ P T  NTT T+ PP T
Sbjct: 95  TVPPT-TSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVVPPTTHVNTT-TVVPPTT 150

Query: 712 KA 717
            A
Sbjct: 151 HA 152


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 713 FVHGGLKVPVVFEGVXGAITVDDTVIT 633
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 258 KEKKGXVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 368
           K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 139 KRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 581 DLEVNSVVFQHGGKLPGDFLAXFVFGVTECNFVV 480
           DLE N +V Q+ G   G+FL    FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 556 KTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPXTPSNTTGTLSPPCT 711
           +TTE T+    P T ++  S T  ++  T   T I P  P N + ++S P T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPT 901


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 491  NFVVVLLXDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 363
            N  VVLL D + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1281 NAHVVLLQD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,387
Number of Sequences: 5004
Number of extensions: 52746
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)