Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_L02
(865 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) 30 2.8
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 29 4.9
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 4.9
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 28 8.5
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13) 28 8.5
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 31.5 bits (68), Expect = 0.92
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +1
Query: 496 SVTPKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPXTP 675
S++P + R S GSL P +T+ TSRS PR+ S + + ST P TP
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRS-TPRSRS-----RSRARTPSTPSTPSTPSTP 232
Query: 676 SNTT 687
S T
Sbjct: 233 STIT 236
>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
Length = 260
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 343 W*AKSMVFLLPFSIRRFTASLITXPFFSFRYSEHLAIAXAYSPMT-TRI 200
W + +F++ SI + A+L F F H+ A AYS T TRI
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRTQTRI 175
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 505 PKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST 606
P TK PP K T + R CPP T T
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 169
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 505 PKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST 606
P TK PP K T + R CPP T T
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 183
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 505 PKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST 606
P TK PP K T + R CPP T T
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 197
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 505 PKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST 606
P TK PP K T + R CPP T T
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 211
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 505 PKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST 606
P TK PP K T + R CPP T T
Sbjct: 220 PLTKCTYYRKRRCPPLTKCTNYRKRRCPPLTRCT 253
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 505 PKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST 606
P TK PP K T + R CPP T T
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 222
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 505 PKTKXARKSPGSLPPCWKTTEFTSRSCPPRTNST 606
P TK PP K T + R CPP T T
Sbjct: 147 PLTKCTNYLKRRCPPLTKCTNYRKRRCPPLTRCT 180
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +3
Query: 222 YAXAIAKCSEYLKEK--KGXVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 389
Y I K E+ KEK KG K R E GKR A +D E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 540 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 659
FT + E K MS E+KQ K DN KG S+ + GD
Sbjct: 204 FTEMEEKIDEKVKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243
>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
Length = 618
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 550 TGVNFQE--TFLLXLSLESPNAILLWFCXSINLRA*WSLLFMSLTVCSVKITLNWMGK*D 377
TGV F E + L L S +++ +++ ++ LRA ++LLF T +L + G D
Sbjct: 517 TGVQFDEFAVYCKPLELASVDSMYIFYKGALGLRANYTLLFPDKTWSYYWTSLEYSGLLD 576
Query: 376 L 374
L
Sbjct: 577 L 577
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,554,930
Number of Sequences: 59808
Number of extensions: 411725
Number of successful extensions: 1049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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