Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_L01
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    27   2.6  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    26   5.9  

>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 147 EKRAESEREXNCRXEAGHXEERRVPARQHAGXPKVLRKARV 25
           EK  E ER+   + E  H +     A++ A  PK+ +KA++
Sbjct: 27  EKELERERQKAAKLEKYHAKLAAKKAKEEARKPKLDKKAKI 67


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 490 LVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTXHQEXRVRXPSIARP 332
           L+  +  D  D DGP+V+PV  RA   PA      ++T   +  V  P++  P
Sbjct: 36  LIEEDDEDTEDDDGPQVLPVH-RAP-SPAAFRKRGSITSMDQYLVNMPAVPSP 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,011
Number of Sequences: 5004
Number of extensions: 36523
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)