Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_L01
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1074 + 30168065-30168577 32 0.67
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 31 1.2
08_02_1583 + 28036125-28037030,28037411-28037656 31 1.5
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 30 2.7
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 28 8.3
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784... 28 8.3
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 8.3
>03_05_1074 + 30168065-30168577
Length = 170
Score = 31.9 bits (69), Expect = 0.67
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 544 LHAAAQQRPQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGA 398
L AA ++RP + + AA VR A D DGP V P + P A
Sbjct: 95 LPAAMRRRPLQAEEMAALAVRASAALVGDHDGPLVFPEAAASAADPRAA 143
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 341 NTGXSDPRFLVGGNGKVYEGSGWLHVGAHTYGYXSRSIGVAFIGNFNTDEPS 496
NTG S +GG G+++ G W + Y S S +A G + ++PS
Sbjct: 385 NTGYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPS 436
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = -2
Query: 426 CAPTCSQPEPSYTLPLPPTRXRGSXXPVLQGLHVVGLDIPHELLAASVRPAEG 268
C P C QPE TL +PP G VLQ V GL + H +V P G
Sbjct: 242 CYPECPQPE--LTLGMPPHSDYGFLTLVLQD-EVAGLQVMHAGEWLTVDPLPG 291
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 328 CGWSGYSARAPRSQRPSCR 272
CG+ GYS AP++ RPSCR
Sbjct: 63 CGY-GYSTPAPKAPRPSCR 80
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 504 IAPLGSSVLKLPMNATPMDLEXYP*VCAPTCSQPE-PSYTLPLPPTRXRGSXXPVLQGLH 328
++ +G +L +A + L P P S+PE P++ LP PP+ S PVL +
Sbjct: 3 LSRVGEKLLSSVRSARSLGL--LPPTPPPPASRPEVPNHFLPPPPSSISHSVYPVLDPIE 60
Query: 327 V 325
V
Sbjct: 61 V 61
>05_05_0055 +
21977546-21978061,21978144-21978162,21978168-21978486,
21978779-21978799,21980780-21980857,21981116-21981359
Length = 398
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 543 SAXTSRGTXXPWXTDSSLPLRAPAGSSTTRYDAGLSGWR 659
S T+R P P+RA AGSS T G WR
Sbjct: 76 STTTTRRRPSPGRLPRRSPIRARAGSSETSSPRGRENWR 114
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 356 PXXQYCKASMWLVWIFRTSSSQPASV-LQKGVTVCWTMTRXTGRAR 222
P +YC +W +WI ++ QP V Q+ + W+ GRA+
Sbjct: 816 PLVKYCPPELWRMWI--SNLLQPLFVHCQQALDFSWSSLLREGRAK 859
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,023,264
Number of Sequences: 37544
Number of extensions: 344216
Number of successful extensions: 1161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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