Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K23
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    35   0.017
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    27   4.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   4.5  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   4.5  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 21/50 (42%), Positives = 24/50 (48%)
 Frame = +1

Query: 514 MQNASFSTLXGSVKDRIXYRMFLDAXQKGILKPGSQS*XNHIW*TGIGLA 663
           +  A F    GSVKDR  Y +  DA +KG L  G          TGIGLA
Sbjct: 41  LAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTIVEGTAGNTGIGLA 90


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 465 VKLSKLPKDEGLKCEMYAKCEFLNPG 542
           V++  L +  G  C++ AK EFLNPG
Sbjct: 56  VRIKSLSQATG--CDILAKAEFLNPG 79


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 302 INSNMSNHVDAKNGTSNSARKFFTLKDMP 388
           INSN+SN +D+ +  ++SA   F   D+P
Sbjct: 157 INSNISNSLDSVSQHNSSADSLFVNGDVP 185


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 305 NSNMSNHVDAKNGTSNSARKFFT 373
           N+N SN+ +  NGT  +A+ FFT
Sbjct: 321 NNNNSNNNNGNNGTVPNAKTFFT 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,648
Number of Sequences: 5004
Number of extensions: 47600
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)