Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K20
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031620-3|CAA20928.1|  310|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   5.6  
U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    29   5.6  
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    29   5.6  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   5.6  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z47072-1|CAA87368.1|  252|Caenorhabditis elegans Hypothetical pr...    28   9.7  
X64904-1|CAA46108.1|  184|Caenorhabditis elegans unc-4 protein.        28   9.7  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   9.7  
AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p4...    28   9.7  

>AL031620-3|CAA20928.1|  310|Caenorhabditis elegans Hypothetical
           protein C18B12.3 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 100 PESRQTSWFPAREANWQKAEGRPR 29
           PE R T WF  R A W++ E R R
Sbjct: 220 PEDRITVWFQNRRAKWRRKEHRQR 243


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 154  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 249
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 154  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 249
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +1

Query: 187 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEXFLKMYRTGFMPKXLX 366
           K KK+ S F +    +T D YY + + + + +    +TN   V+  +K Y     P    
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 367 FSVFYDXMXDEAIALFHLFYYAKD 438
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +1

Query: 187 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEXFLKMYRTGFMPKXLX 366
           K KK+ S F +    +T D YY + + + + +    +TN   V+  +K Y     P    
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 367 FSVFYDXMXDEAIALFHLFYYAKD 438
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 154  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 249
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 103  QPESRQTSWFPAREANWQKAEGRPRV 26
            QP+SR TSW   R  N   A+G P +
Sbjct: 1175 QPDSRFTSWVCCRVLNLDTADGLPPI 1200


>Z47072-1|CAA87368.1|  252|Caenorhabditis elegans Hypothetical
           protein F26C11.2 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 208 RTEFS-FAFQQIRHPHFLTLWCSVLVLHC*ARRLQAQPESRQTSWFPAREANWQKAEGRP 32
           RT FS +  +++      + +  V +    A RL    ESR   WF  R A W+K E + 
Sbjct: 92  RTNFSGWQLEELESAFEASHYPDVFMREALAMRLDLL-ESRVQVWFQNRRAKWRKRE-QN 149

Query: 31  RVGEXECK 8
           R G  E K
Sbjct: 150 RNGSSEIK 157


>X64904-1|CAA46108.1|  184|Caenorhabditis elegans unc-4 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 208 RTEFS-FAFQQIRHPHFLTLWCSVLVLHC*ARRLQAQPESRQTSWFPAREANWQKAEGRP 32
           RT FS +  +++      + +  V +    A RL    ESR   WF  R A W+K E + 
Sbjct: 56  RTNFSGWQLEELESAFEASHYPDVFMREALAMRLDLL-ESRVQVWFQNRRAKWRKRE-QN 113

Query: 31  RVGEXECK 8
           R G  E K
Sbjct: 114 RNGSSEIK 121


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 27   TRGLPSAFCQFASRAGNHEVCLDSGWAC 110
            +R  P  FC F S      +C+D   AC
Sbjct: 1946 SRSYPKTFCTFDSECTGGSICIDKRCAC 1973


>AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p450
           family protein 34A6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 205 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEXF 324
           +F   +S ++TDDE +K  K+++ E  M+N   +K +  F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,583,661
Number of Sequences: 27780
Number of extensions: 189144
Number of successful extensions: 459
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)