Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K19
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   129   5e-31
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    27   4.8  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  129 bits (312), Expect = 5e-31
 Identities = 55/75 (73%), Positives = 64/75 (85%)
 Frame = +3

Query: 108 LHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPT 287
           L+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+++LCQPT
Sbjct: 8   LNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPT 67

Query: 288 GGRARLTEGCSFRRK 332
           GG+ARL EGCSFRRK
Sbjct: 68  GGKARLMEGCSFRRK 82


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +3

Query: 51  CLFLVVH*SCNHACSQLICLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYK 212
           C  L +  S + A S  +CL P  +       L  +      +  D KC  C+K
Sbjct: 175 CQCLAISISYSTATSIQLCLPPEYSGNSNVSLLSLMEADREQHISDYKCDSCFK 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,655
Number of Sequences: 5004
Number of extensions: 31411
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)