Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_K16
(1587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0070 - 542603-542686,542803-543441 35 0.15
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 31 3.3
12_02_1174 - 26696869-26698191 30 4.4
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 30 4.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 7.7
09_06_0081 + 20745627-20748144,20748211-20748308 29 7.7
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 29 7.7
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 35.1 bits (77), Expect = 0.15
Identities = 21/67 (31%), Positives = 23/67 (34%)
Frame = -3
Query: 397 VTPXPSLIPRXFXXXPXXXXLXXPXXIX*XXVSPPXXLXPPXXSPSVLPPXTXXTRHPXX 218
VTP P P+ P P + VSPP PP PS PP P
Sbjct: 80 VTPPPPT-PKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAA 138
Query: 217 XPPFXFP 197
PP P
Sbjct: 139 LPPATTP 145
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = -2
Query: 287 PXPPXXLSXCSSPLXXXHSPPXXXSPLXFSXLSPYFIXPQPSXHPXLGPXPPXSPLXGXF 108
P PP L +P PP S + S L+ P G PP +P G +
Sbjct: 8 PSPPTTLITTQAPPIQPPPPPGGNSMIMPSSLTTAGTSQSPPDATTAGAPPPPAPSVGAW 67
Query: 107 GG 102
GG
Sbjct: 68 GG 69
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.3 bits (65), Expect = 4.4
Identities = 25/83 (30%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Frame = -3
Query: 433 PPPRXXXVXTTQVTPXPSLIPRXFXXXPXXXXLXXPXXIX*XXV----SPPXXLXPPXXS 266
PPPR V V P P P P P + V PP L PP
Sbjct: 163 PPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPP 222
Query: 265 PSVLPPXTXXTRHPXXXPPFXFP 197
P PP T R P P P
Sbjct: 223 P---PPPTVPPRTPGDTPAVVEP 242
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 30.3 bits (65), Expect = 4.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 173 PQPSXHPXLGPXPPXSPL 120
PQP HP L P PP +PL
Sbjct: 70 PQPQPHPQLQPPPPPAPL 87
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 7.7
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = -2
Query: 296 PXXPXPPXXLSXCSSPLXXXHSPPXXXSPLXFSXLSPYFIXPQPSXHPXLGPXPPXSP 123
P P PP L C P PP P P P P+ H L P PP P
Sbjct: 585 PPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPN-HSVLPPPPPPPP 641
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 7.7
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = -2
Query: 296 PXXPXPPXXLSXCSSPLXXXHSPPXXXSPLXFSXL--SPYFIXPQPSXHPXLGPXPPXSP 123
P P P +S SP H+PP P + P P + P P P +P
Sbjct: 512 PTPPAPAPPVSTLPSPAPSVHTPPVTAPPATAPPMIAPPVATPPDSASSPSTVPRMPSAP 571
Query: 122 L 120
L
Sbjct: 572 L 572
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 29.5 bits (63), Expect = 7.7
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = -2
Query: 296 PXXPXPPXXLSXCSSPLXXXHSPPXXXSPLXFSXLSPYFIXPQPSXHPXLGPXPPXSP 123
P P PP S P SPP +P L P F PQP P +P
Sbjct: 463 PSPPEPPSPRDPASPP--SLRSPPRQPTPPPSPSLQPAFPAPQPVQASPTSPAKQHAP 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,402
Number of Sequences: 37544
Number of extensions: 224460
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5139733844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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