Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K14
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.0  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   5.0  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    26   8.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 740 PXHPPPVFSPLGRSPXPXSXXSXPPP 817
           P  PPP  +  G  P P    S PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPP 363


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -3

Query: 408 STVXXECSMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGA 268
           S V    S + SLFS       R   RF        F G++GW  +LG+
Sbjct: 340 SLVSHISSSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 12  PTRPHLLCGIPLRF*LPGVQVDTTQHVQVFSIQFSSWCLFFAQ 140
           P RP LL G   R  LP   +D      +F+ + S W LFF Q
Sbjct: 118 PLRPTLLYG---RMHLPSQHLDA-----IFATRLSPWLLFFIQ 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,883
Number of Sequences: 5004
Number of extensions: 55579
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)