Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K14
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    34   0.13 
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    31   1.5  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.2  

>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -2

Query: 853 GSXXGEXGXRXXG-WGGTXXGXGXWGTXQXGKYRWXVXGAG 734
           G   G  G R  G WGG   G G WG    G+  W   G G
Sbjct: 54  GGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGG 94



 Score = 33.1 bits (72), Expect = 0.29
 Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
 Frame = -2

Query: 853 GSXXGEXGXRXXGWG-GTXXGXGXWGTXQXGKYRWXVXGAGXGKKXXXXNGGXEXRXQME 677
           G   G       GWG G   G G WG    G   W   G G G       GG     + +
Sbjct: 44  GGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGRGGGGRGD 103

Query: 676 XXEGHSGXLGVW 641
               ++G  G W
Sbjct: 104 WGGNNNGGGGNW 115


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 21/72 (29%), Positives = 25/72 (34%)
 Frame = -2

Query: 862 RXXGSXXGEXGXRXXGWGGTXXGXGXWGTXQXGKYRWXVXGAGXGKKXXXXNGGXEXRXQ 683
           R  GS  G  G    G GG+  G G WG  Q G       G   G      +GG     +
Sbjct: 67  RGGGSGGGRGGSGGAGAGGSGSGSGGWG-GQDGGSSAGGWGGSQGGSQGGSSGGWGGSSR 125

Query: 682 MEXXEGHSGXLG 647
            +   G  G  G
Sbjct: 126 SDSGSGQGGWGG 137



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
 Frame = -2

Query: 853 GSXXGEXGXRXXGWGG-----TXXGXGXWGTXQXGKYRWXVXGAGXGKKXXXXNGG 701
           GS  G  G    GWGG     +  G G WG  Q G         G G      NGG
Sbjct: 107 GSQGGSQGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSN----AGGWGGSQGGQNGG 158


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 740 PXHPPPVFSPLGRSPXPXSXXSXPPPXXSPP 832
           P  PPP   P G+ P P      P P  +PP
Sbjct: 57  PSSPPPAPRPSGQPPGPQGPSDLPGPSGAPP 87


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 144 SCQRFIQPTFSATANTAPDNTYSATSWPGTAMAVS 248
           S   F+ PT S TA T P +T  A S   +AMA S
Sbjct: 463 STPSFLSPTDSLTATTPPGSTTQAASTTESAMASS 497


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 749 PPPVFSPLGRSPXPXSXXSXPPP 817
           PPP   P GR+P P      PPP
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPP 319


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = -2

Query: 853 GSXXGEXGXRXXGWGGTXXGXGXWGTXQXGKYRWXVXGAGXGKKXXXXNGG 701
           G   G  G R  GWG    G G WG    G       G G G       GG
Sbjct: 59  GGGSGWGGGRGGGWGNNG-GGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGG 108


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 749 PPPVFSPLGRSPXPXSXXSXPPP 817
           PPP   P GR+P P      PPP
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPP 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,923
Number of Sequences: 27780
Number of extensions: 348828
Number of successful extensions: 1239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)