Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K13
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    66   3e-11
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    66   3e-11
U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian ...    29   4.2  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = +3

Query: 636 PXYPHXGLLVDTSRHYXSMSNILLILDAMAMNXMXVFXWHIVDXXXFPYXXXRFPXLXXL 815
           P +P  G+++D+SRH+ S++ I   L+ M+MN + V  WH+VD   FPY   +FP L  +
Sbjct: 168 PRFPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSVKFPELHGV 227

Query: 816 GPYPXTLIY 842
           G Y    +Y
Sbjct: 228 GAYSPRHVY 236



 Score = 35.1 bits (77), Expect = 0.065
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 464 PHFGMIESYNLTIA-ADSTLRSSSIWGILRGLESWTHLXHLSDXRDPLHINXGXVHDFPX 640
           P  G  E Y L ++  ++ + + ++WG LR +ES +HL           I    + D P 
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 641 LP 646
            P
Sbjct: 170 FP 171


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = +3

Query: 636 PXYPHXGLLVDTSRHYXSMSNILLILDAMAMNXMXVFXWHIVDXXXFPYXXXRFPXLXXL 815
           P +P  G+++D+SRH+ S++ I   L+ M+MN + V  WH+VD   FPY   +FP L  +
Sbjct: 168 PRFPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSVKFPELHGV 227

Query: 816 GPYPXTLIY 842
           G Y    +Y
Sbjct: 228 GAYSPRHVY 236



 Score = 35.1 bits (77), Expect = 0.065
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 464 PHFGMIESYNLTIA-ADSTLRSSSIWGILRGLESWTHLXHLSDXRDPLHINXGXVHDFPX 640
           P  G  E Y L ++  ++ + + ++WG LR +ES +HL           I    + D P 
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 641 LP 646
            P
Sbjct: 170 FP 171


>U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian
           oncogene) relatedkinase protein 1, isoform a protein.
          Length = 566

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +2

Query: 392 LDDDTYDGPLKSLSIYLTSPCEEYPHFGMIESYNLTIAADSTLRSSSIWGILRGLESWTH 571
           L   +YD    S S    S CE +PH G   S + ++ A   ++S+S + ++R  +  + 
Sbjct: 401 LVSSSYDDQFTSTSDIYQSACEVFPHTGSSSSLSRSMGA---VKSASAYNLVRMRKKSSI 457

Query: 572 LXHLSDXRDPLHIN 613
                   DP+  N
Sbjct: 458 FKSFDTELDPVSEN 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,519,016
Number of Sequences: 27780
Number of extensions: 345715
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)