Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K12
         (998 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z85987-2|CAI42223.1|  191|Homo sapiens TSR2, 20S rRNA accumulati...    44   0.001
BC011825-1|AAH11825.1|  191|Homo sapiens TSR2, 20S rRNA accumula...    44   0.001
BC007699-1|AAH07699.1|  191|Homo sapiens TSR2 protein protein.         44   0.001
AJ400879-3|CAC35389.1| 1214|Homo sapiens KIAA0298 protein protein.     32   3.7  
AB002296-1|BAA20758.2|  901|Homo sapiens KIAA0298 protein protein.     32   3.7  

>Z85987-2|CAI42223.1|  191|Homo sapiens TSR2, 20S rRNA accumulation,
           homolog (S. cerevisiae) protein.
          Length = 191

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 161 FKPIVDLVLNNWTALQLAVEHGMGAPGGEKTAQLMAVXIXRYCVENV-VDXXELAEVIED 337
           F+  V   L  W ALQ+AVE+G G    ++ A+ +   +  Y + N  ++  E+ + + +
Sbjct: 12  FRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADLELDEVEDFLGE 71

Query: 338 LMDXXFDTVXHDESPKEIA 394
           L+   FDTV  D S  +++
Sbjct: 72  LLTNEFDTVVEDGSLPQVS 90


>BC011825-1|AAH11825.1|  191|Homo sapiens TSR2, 20S rRNA
           accumulation, homolog (S. cerevisiae) protein.
          Length = 191

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 161 FKPIVDLVLNNWTALQLAVEHGMGAPGGEKTAQLMAVXIXRYCVENV-VDXXELAEVIED 337
           F+  V   L  W ALQ+AVE+G G    ++ A+ +   +  Y + N  ++  E+ + + +
Sbjct: 12  FRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADLELDEVEDFLGE 71

Query: 338 LMDXXFDTVXHDESPKEIA 394
           L+   FDTV  D S  +++
Sbjct: 72  LLTNEFDTVVEDGSLPQVS 90


>BC007699-1|AAH07699.1|  191|Homo sapiens TSR2 protein protein.
          Length = 191

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 161 FKPIVDLVLNNWTALQLAVEHGMGAPGGEKTAQLMAVXIXRYCVENV-VDXXELAEVIED 337
           F+  V   L  W ALQ+AVE+G G    ++ A+ +   +  Y + N  ++  E+ + + +
Sbjct: 12  FRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADLELDEVEDFLGE 71

Query: 338 LMDXXFDTVXHDESPKEIA 394
           L+   FDTV  D S  +++
Sbjct: 72  LLTNEFDTVVEDGSLPQVS 90


>AJ400879-3|CAC35389.1| 1214|Homo sapiens KIAA0298 protein protein.
          Length = 1214

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = +1

Query: 724 EDQXXYRLXPPXPLSPHXVHXPPTPLXSXQPXXPSDPSXTXAXPXFHNTXPG 879
           + Q   +L PP P  PH    PP P    QP  P  PS   A    H + PG
Sbjct: 448 QQQPQQQLPPPPPPLPHP--PPPLPPPPQQPHPPLPPSQHLASSQ-HESPPG 496


>AB002296-1|BAA20758.2|  901|Homo sapiens KIAA0298 protein protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = +1

Query: 724 EDQXXYRLXPPXPLSPHXVHXPPTPLXSXQPXXPSDPSXTXAXPXFHNTXPG 879
           + Q   +L PP P  PH    PP P    QP  P  PS   A    H + PG
Sbjct: 483 QQQPQQQLPPPPPPLPHP--PPPLPPPPQQPHPPLPPSQHLASSQ-HESPPG 531


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,262,140
Number of Sequences: 237096
Number of extensions: 1381961
Number of successful extensions: 4614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4457
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13323281566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)