Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K10
         (1009 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   4.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.5  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPP 236



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP          PPPP+   P    PPP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
           PPP   K     PPPP   E      PPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 318 PPPPPLGEXPXXWGPPP 268
           PPPPP G  P    PPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPP 304
           PPPG +      PPPPP
Sbjct: 14  PPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = -2

Query: 354 PPPGXKKXXXXXPPPPP--LGEXPXXWGPPP 268
           PPP         PPPPP   G  P    PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,709
Number of Sequences: 5004
Number of extensions: 19447
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)