Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_K10
(1009 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.046
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.046
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.046
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.74
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.74
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.0
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 4.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 4.0
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 6.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.046
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWG--PPPXXLX*XPKIFXXXPP 223
PPPG PPPPP G P G PPP P I PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPP 223
PPPG PPPPP P G PP P F PP
Sbjct: 746 PPPGGLPPISGGPPPPP----PPPGGCPPPPPPPPPGGFKGGPP 785
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPL--GEXPXXWGPPP 268
PPP PPPPP G P GPPP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPP 744
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
PPP PPPPP GPPP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.046
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWG--PPPXXLX*XPKIFXXXPP 223
PPPG PPPPP G P G PPP P I PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPP 223
PPPG PPPPP P G PP P F PP
Sbjct: 746 PPPGGLPPISGGPPPPP----PPPGGCPPPPPPPPPGGFKGGPP 785
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPL--GEXPXXWGPPP 268
PPP PPPPP G P GPPP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPP 744
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
PPP PPPPP GPPP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.046
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWG--PPPXXLX*XPKIFXXXPP 223
PPPG PPPPP G P G PPP P I PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPP 223
PPPG PPPPP P G PP P F PP
Sbjct: 329 PPPGGLPPISGGPPPPP----PPPGGCPPPPPPPPPGGFKGGPP 368
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPL--GEXPXXWGPPP 268
PPP PPPPP G P GPPP
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPP 327
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
PPP PPPPP GPPP
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.74
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPPXXGXFXKXXPRG 187
PPP PPPPP G P G P P F PP G P G
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF--GPPGMGGMPPPPPPG 340
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPL--GEXPXXWGPPP 268
PPPG + PPPPP P + PPP
Sbjct: 337 PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 367
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.74
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPPXXGXFXKXXPRG 187
PPP PPPPP G P G P P F PP G P G
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF--GPPGMGGMPPPPPPG 350
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPL--GEXPXXWGPPP 268
PPPG + PPPPP P + PPP
Sbjct: 347 PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 377
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -2
Query: 357 APPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPP 223
+PPP + PPPPP G P PPP P PP
Sbjct: 288 SPPP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -2
Query: 357 APPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPP 223
+PPP + PPPPP G P PPP P PP
Sbjct: 309 SPPP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -2
Query: 357 APPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPP 223
+PPP + PPPPP G P PPP P PP
Sbjct: 294 SPPP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 269 GGGPQXXGXSPKGGGGGXXXXFFFXPGGG 355
GGGP G GGGGG F GGG
Sbjct: 141 GGGPGGYGMGGYGGGGGGGGDFGGYGGGG 169
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
PPP + PPPPP P GPPP
Sbjct: 564 PPPPLPQNLSGAPPPPP-PPPPMLGGPPP 591
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPP 268
PPP PPPPP P PPP
Sbjct: 72 PPPPLISILQQAPPPPPPPPPPTLKAPPP 100
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = -2
Query: 354 PPPGXKKXXXXXPPPPPLGEXPXXWGPPPXXLX*XPKIFXXXPPXXG 214
PPP PPP G P G PP + P +F PP G
Sbjct: 1469 PPPRGMNSPMRGMPPPMRGGGPPMRGGPP--MRGGPPMFRGGPPGPG 1513
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,809
Number of Sequences: 27780
Number of extensions: 246859
Number of successful extensions: 2357
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2170
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2646946214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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