Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K04
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.16 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.28 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = +1

Query: 718 PPPPXGGXXXXXXXXAXPXXXFXPPXGXXPPPXPPPXXXXXXGGPPPP 861
           PPPP             P     P  G  PPP PPP        PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 790 PXGXXPPPXPPPXXXXXXGGPPPP 861
           P G  PPP PPP        PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 29.5 bits (63), Expect = 0.64
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 788 PPXGXPPXPPPPXXXXXXXGGPPP 859
           PP   PP PPPP         PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 787 PPXGXXPPPXPPPXXXXXXGGPPPP 861
           PP G   PP PPP      G  PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +1

Query: 685 PXXXXXGGGXXPPPPXGGXXXXXXXXAXPXXXFXPPXGXXPPPXPPP 825
           P     G    PP P             P     PP    PPP P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 787  PPXGXXPPPXPPPXXXXXXGGPPPP 861
            PP    PPP  PP        PPPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,897
Number of Sequences: 5004
Number of extensions: 29680
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)