Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_K02
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    35   0.065
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    29   3.2  
AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin prot...    29   4.3  
AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin prot...    29   4.3  
AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin prot...    29   4.3  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    28   7.5  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    28   9.9  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   9.9  

>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +1

Query: 322 YQLSKRGVNAVLL-ERAK---LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKE 489
           Y L+KR +  VLL ERA      SGT++H+ G+V +  P      +L  S  +YS L  E
Sbjct: 44  YHLTKRNIKDVLLLERASGVASPSGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAE 103

Query: 490 VDDYAGWINNGGMFISRSTVRTQEY 564
                 +   G + ++ +  R  E+
Sbjct: 104 TGVNIDFQPTGTIRLATNETRLAEF 128


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
 Frame = +1

Query: 322 YQLSKRGVNAVLL-ERAK----------LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTV 468
           Y L+KR +  VLL ERA             SGT++H+ G+V +  P      +L  S  +
Sbjct: 44  YHLTKRNIKDVLLLERASDGDFGVHGVASPSGTSFHSPGLVSASHPAHRYKPILAHSIEL 103

Query: 469 YSALAKEVDDYAGWINNGGMFISRSTVRTQEY 564
           YS L  E      +   G + ++ +  R  E+
Sbjct: 104 YSKLEAETGVNIDFQPTGTIRLATNETRLAEF 135


>AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin
           protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 17  PASPTRGLPXHTFASLVVAPRGXTXTKPSS 106
           PA PTR LP H  +S    PRG    K  S
Sbjct: 331 PAVPTRRLPPHPSSSSAAPPRGHMSDKVES 360


>AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin protein
           1, isoform a protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 17  PASPTRGLPXHTFASLVVAPRGXTXTKPSS 106
           PA PTR LP H  +S    PRG    K  S
Sbjct: 331 PAVPTRRLPPHPSSSSAAPPRGHMSDKVES 360


>AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin protein
           1, isoform b protein.
          Length = 474

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 17  PASPTRGLPXHTFASLVVAPRGXTXTKPSS 106
           PA PTR LP H  +S    PRG    K  S
Sbjct: 404 PAVPTRRLPPHPSSSSAAPPRGHMSDKVES 433


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 433 LEVKLLRDSRTVYSALAKEVDD--YAGWINN 519
           LE+K+     T++SAL +E +   Y GW NN
Sbjct: 17  LEIKVQFSKETLFSALQQEAETQRYDGWYNN 47


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 373 LTSGTTWHTAGMVWSLRPCDLEVKLL 450
           L +GTTW  +GM   +  CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 373 LTSGTTWHTAGMVWSLRPCDLEVKLL 450
           L +GTTW  +GM   +  CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,758
Number of Sequences: 27780
Number of extensions: 295841
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)