Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J24
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.011
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   5.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.011
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +1

Query: 706 PPPXXPXXXPXXXXXPPPPXXXPPPXPXXXPPXPXXPPXXPP 831
           P    P   P     P  P    PP P   PP P  PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP-PGGPPGAPP 56



 Score = 27.1 bits (57), Expect = 0.24
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 543 PLPXXPPPPXXPPXXPPXPXPXXXXXXP 626
           P P   PPP  PP  PP   P      P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 25.0 bits (52), Expect = 0.97
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 772 PPPXPXXXPPXPXXPPXXPPXXXXPPPPXXPP 867
           P P P   P  P      PP     PPP  PP
Sbjct: 23  PQPSPHQSPQAPQR--GSPPNPSQGPPPGGPP 52


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -1

Query: 800 GGXXXGXGGGXXXGGGGXXXXXGXXXGXXGGG 705
           GG      GG   G  G     G   G  GGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 557 PPPPXXPPXPPXXPXP 604
           PP P  PP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 544 PSPXPPPPXXXPP 582
           P+P PPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 23/117 (19%), Positives = 23/117 (19%)
 Frame = +2

Query: 566 PXXPPXPPXXPXPXXXXXXPXXXXPXXXXXXXPXPPXXXXPXXXXXSPXPXXPXXXPXXX 745
           P   P  P           P    P       P  P           P    P   P   
Sbjct: 51  PQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPR 110

Query: 746 XPXXXPXXPPPPXXPXXPXXPXPPXPXPXXXXXPPPPXXXPXXXXPXXXXXPXPPXP 916
            P        P   P        P P P        P   P    P     P PP P
Sbjct: 111 PPHPR-LRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,476
Number of Sequences: 438
Number of extensions: 9323
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)