Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_J20
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 33 0.29
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 31 0.89
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 30 2.7
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 29 3.6
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 29 4.7
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 6.3
08_02_1129 - 24513568-24514296,24515380-24515817 28 8.3
07_01_0229 - 1672126-1673976,1674427-1675404 28 8.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 8.3
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 33.1 bits (72), Expect = 0.29
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 293 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 391
K ++ E +VEGD Y + +H PG+ K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 31.5 bits (68), Expect = 0.89
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +2
Query: 131 PRHSTTMARHIGRITITTP--FSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPS 304
P+ S+T +G I P F P + L H WS L+ + H+ L F
Sbjct: 303 PQISSTYDGSVGLSDIGVPYRFQPDTLDKNLMHHGSWSFLS--IAHI--------LCF-- 350
Query: 305 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 463
I ++G++EG + I H+P E D+ V + + + +S H K N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 552 ARGQLQSPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPXRPMR 683
A G+ P P V SS PR C LTS +R+P P R
Sbjct: 5 AVGEATPPPGGPPSRVSVSSSSSTPRRRCAALTSRFREPASPRR 48
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 609 RWSSPPRATCGTLTSAWRQPXRPMRSRKLXXRP 707
RW+ PP C T S + P RP R RP
Sbjct: 120 RWAPPPAPRCSTPLSPYSPPFRPARLIVRWARP 152
>06_03_1033 -
27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 29.1 bits (62), Expect = 4.7
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
Frame = +2
Query: 359 PGY-EQKDINVKAKNGVLMVQANSAFNH----YLKIQNLPWD------------VNSEXS 487
PGY E ++ +N +++ +AN+ FN YL +++ W +E
Sbjct: 525 PGYYEDGSFGIRLENVLIVKEANTKFNFGDKGYLAFEHITWTPYQTKLIDTTLLTPAEIE 584
Query: 488 WV--YEKDVLKITFPLKQKQPEDSKRPVAEP 574
WV Y D KI P +Q ++ R EP
Sbjct: 585 WVNAYHSDCRKILQPYLNEQEKEWLRKATEP 615
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 200 VRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQIS 349
+++++L+ LA+E+Q D ++ EL K S + R+E + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 665 LSPSRRQRPARCSRW*TPSLHDLHS*GSSQWALQLASC 552
+SP QR A CSRW PS L + + A+QL C
Sbjct: 262 VSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVC 299
>07_01_0229 - 1672126-1673976,1674427-1675404
Length = 942
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = -1
Query: 684 ISLVXWAVSKPTSTSRTLLSVVNSISSRLTFVGVVSVGSATGLLLS 547
++L + +++PT +TLLS+ ++S+ LT V V + +ATG + S
Sbjct: 488 VALAPFKMARPT---KTLLSMSYNLSAVLTNVAYVGLSAATGQIES 530
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 536 KQPEDSKRPVAEPTETTPTNVSREEMEFTTESNVRD 643
+QP SKRP AE T TT + ++ +E ++ VRD
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLEALYDA-VRD 730
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,851,203
Number of Sequences: 37544
Number of extensions: 403508
Number of successful extensions: 1214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -