Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J18
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    28   0.13 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.31 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 19/75 (25%), Positives = 19/75 (25%)
 Frame = +3

Query: 576 AXXGXKXPXXXXXPXXPXPXXXXPPPPXQPXPXPXXPPPPXPPXPXXPXXXXXXXXXXXX 755
           A  G   P     P  P P     P        P   P P PP P               
Sbjct: 96  AEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP----RLRREPEAEPG 151

Query: 756 GGXPXXXPXPXPPXP 800
              P   P P PP P
Sbjct: 152 NNRPVYIPQPRPPHP 166


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = +3

Query: 816 PPPSPXXXPXXP-XXXPPXPXXXPPP 890
           P PSP   P  P    PP P   PPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 25.0 bits (52), Expect = 0.93
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
 Frame = +1

Query: 619 PXXXPXPXX-PXXPX--NPPXPXPXPPPPXPP 705
           P   P P   P  P   +PP P   PPP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
 Frame = +3

Query: 759 GXPXXXPXPXP-PXPPPXXXPP-PSPXXXPXXPXXXPP 866
           G P   P P   P  P    PP PS    P  P   PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 229 GPPPXGPXGXXP 264
           GPPP GP G  P
Sbjct: 45  GPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/34 (29%), Positives = 10/34 (29%)
 Frame = +3

Query: 792 PXPPPXXXPPPSPXXXPXXPXXXPPXPXXXPPPP 893
           P P P   P       P  P   PP       PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +3

Query: 624 PXPXXXXPPPPXQPXPXPXXPPPPXPPXPXXP 719
           P P      P     P P   PPP  P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 664 PPXPXPXPPPPXPPXP 711
           PP P P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 759 GXPXXXPXPXPPXPPPXXXPPPS 827
           G     P P PP PPP    P S
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGPDS 355



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 673 PXPXPPPPXPPXPG 714
           P P PPPP P   G
Sbjct: 339 PKPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 861 PPXPXXXPPPP 893
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 686  PPPPPPXP 709
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 685  PPPPXPPXPG 714
            PPPP PP  G
Sbjct: 1356 PPPPPPPSSG 1365


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 695  GGGGXGXGXGGLXGXXG 645
            GGGG   G GGL G  G
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 695  GGGGXGXGXGGLXGXXG 645
            GGGG   G GGL G  G
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.158    0.589 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,310
Number of Sequences: 438
Number of extensions: 12309
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)