Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_J17
(906 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein. 33 1.4
BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein. 33 1.4
AF093747-1|AAD29861.1| 115|Homo sapiens KH type splicing regula... 33 1.4
U80017-3|AAC52048.1| 294|Homo sapiens survival motor neuron pro... 31 5.7
U43883-1|AAC50473.1| 294|Homo sapiens survival motor neuron pro... 31 5.7
U21914-1|AAA64505.1| 293|Homo sapiens U18423; it is not known i... 31 5.7
U18423-1|AAA66242.1| 294|Homo sapiens spinal muscular atrophy d... 31 5.7
BC070242-1|AAH70242.1| 282|Homo sapiens survival of motor neuro... 31 5.7
BC062723-1|AAH62723.1| 294|Homo sapiens survival of motor neuro... 31 5.7
BC015308-1|AAH15308.1| 294|Homo sapiens survival of motor neuro... 31 5.7
BC000908-1|AAH00908.1| 282|Homo sapiens SMN1 protein protein. 31 5.7
AC005031-2|AAC62262.1| 294|Homo sapiens survival of motor neuro... 31 5.7
AC004999-1|AAC83178.1| 294|Homo sapiens survival motor neuron 1... 31 5.7
>U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein.
Length = 711
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -1
Query: 528 PPXXPXPXXGGXXXXXXXXGGPPQXPPPPXXXKXGGG 418
PP P P GG GGPP P PP GGG
Sbjct: 9 PPPGPPPPAGGGGGAGGAGGGPP--PGPPGAGDRGGG 43
>BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein.
Length = 710
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -1
Query: 528 PPXXPXPXXGGXXXXXXXXGGPPQXPPPPXXXKXGGG 418
PP P P GG GGPP P PP GGG
Sbjct: 9 PPPGPPPPAGGGGGAGGAGGGPP--PGPPGAGDRGGG 43
>AF093747-1|AAD29861.1| 115|Homo sapiens KH type splicing
regulatory protein protein.
Length = 115
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -1
Query: 528 PPXXPXPXXGGXXXXXXXXGGPPQXPPPPXXXKXGGG 418
PP P P GG GGPP P PP GGG
Sbjct: 9 PPPGPPPPAGGGGGAGGAGGGPP--PGPPGAGDRGGG 43
>U80017-3|AAC52048.1| 294|Homo sapiens survival motor neuron
protein SMN protein.
Length = 294
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
>U43883-1|AAC50473.1| 294|Homo sapiens survival motor neuron
protein.
Length = 294
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
>U21914-1|AAA64505.1| 293|Homo sapiens U18423; it is not known if
this copy of the gene protein.
Length = 293
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 192 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 224
>U18423-1|AAA66242.1| 294|Homo sapiens spinal muscular atrophy
determining gene protein.
Length = 294
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
>BC070242-1|AAH70242.1| 282|Homo sapiens survival of motor neuron
2, centromeric protein.
Length = 282
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
>BC062723-1|AAH62723.1| 294|Homo sapiens survival of motor neuron
1, telomeric protein.
Length = 294
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
>BC015308-1|AAH15308.1| 294|Homo sapiens survival of motor neuron
1, telomeric protein.
Length = 294
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
>BC000908-1|AAH00908.1| 282|Homo sapiens SMN1 protein protein.
Length = 282
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
>AC005031-2|AAC62262.1| 294|Homo sapiens survival of motor neuron 1
product protein.
Length = 294
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
>AC004999-1|AAC83178.1| 294|Homo sapiens survival motor neuron 1
protein protein.
Length = 294
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 540 FFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPPP 442
F PP P P G G PP PPPP
Sbjct: 193 FLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPP 225
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,949,041
Number of Sequences: 237096
Number of extensions: 1777139
Number of successful extensions: 15703
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14197
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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