Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_J17
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.0
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 3.5
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 3.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.5
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 466 PPPXXXXXPXPXXPGXGXXXXXXKKKKKXXXXPPPPXPP 582
PPP P P P G PPPP PP
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +1
Query: 421 PPXFXXXXGGGXLGXPPPXXXXXPXPXXPGXGXXXXXXKKKKKXXXXPPPPXPPRXXRGG 600
PP G G PPP P PG G + PPP PPR G
Sbjct: 302 PPPGRTPGPPGMPGMPPPPPPSRFGP--PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
Query: 601 XXFF 612
+
Sbjct: 360 PGMY 363
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 466 PPPXXXXXPXPXXPGXGXXXXXXKKKKKXXXXPPPPXPP 582
PPP P P P G PPPP PP
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +1
Query: 421 PPXFXXXXGGGXLGXPPPXXXXXPXPXXPGXGXXXXXXKKKKKXXXXPPPPXPPRXXRGG 600
PP G G PPP P PG G + PPP PPR G
Sbjct: 312 PPPGRTPGPPGMPGMPPPPPPSRFGP--PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
Query: 601 XXFF 612
+
Sbjct: 370 PGMY 373
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = -1
Query: 600 PPPXXPXXXGGGGXXXXFFFFFXXPPXXPXPXX---GGXXXXXXXXGGPPQXPPPP 442
PPP P GG PP P P G GGPP PPPP
Sbjct: 538 PPPPPPVGMANGGP----------PPPPPLPLDLLKGAVAGLKSVPGGPPPPPPPP 583
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -1
Query: 600 PPPXXPXXXGGGGXXXXFFFFFXXPPXXPXPXXGGXXXXXXXXGGPPQXPPP 445
PPP P GG F PP P P GG G PP PPP
Sbjct: 75 PPPPGP----GGIPPPPPMFAGGIPP--PPPMMGGIPPPPPMFGAPPPPPPP 120
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 517 PPPXXXXVXXXXXGXGGAXPXPPPPXPXKXRGG 419
PPP G P PPPP P GG
Sbjct: 630 PPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 662
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 517 PPPXXXXVXXXXXGXGGAXPXPPPPXPXKXRGG 419
PPP G P PPPP P GG
Sbjct: 456 PPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 488
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 528 PPXXPXPXXGGXXXXXXXXGGPPQXPPPPXXXKXGGG 418
PP P GG GG P PPPP GG
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -3
Query: 529 PXXXPPPXXXXVXXXXXGXGGAXPXPPPPXPXKXRGG 419
P PP GG P PPPP P +GG
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 528 PPXXPXPXXGGXXXXXXXXGGPPQXPPPPXXXKXGGG 418
PP P GG GG P PPPP GG
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -3
Query: 529 PXXXPPPXXXXVXXXXXGXGGAXPXPPPPXPXKXRGG 419
P PP GG P PPPP P +GG
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 528 PPXXPXPXXGGXXXXXXXXGGPPQXPPPPXXXKXGGG 418
PP P GG GG P PPPP GG
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -3
Query: 529 PXXXPPPXXXXVXXXXXGXGGAXPXPPPPXPXKXRGG 419
P PP GG P PPPP P +GG
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,296,249
Number of Sequences: 27780
Number of extensions: 210761
Number of successful extensions: 2346
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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