Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J15
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    29   0.86 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    29   1.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   2.0  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    27   2.6  

>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 765 AGPPPIKAILWSPPFGSGFVLGSKVGGXPIFMNMSTAKC 649
           A  P   A+ WSPP  SG V+G      P    ++TA C
Sbjct: 143 AHEPGCNAVCWSPPSLSGSVVGQSPAAGP--KKLATAGC 179


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 629 IXIGGLQHFAVDIFMKMGXPPTLDPNT-KPLPK 724
           + I  +   A+ ++   G PPTLDP T KP P+
Sbjct: 241 LSIAAVVSLALGLYQTFGQPPTLDPITGKPEPR 273


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = +2

Query: 560  GMVCPTSDLCVGGCNLHATEXGAIXIGGLQHFAVDIFMKMGXPPTLDPNTKPLPKGGDHK 739
            G VCP    C G C L   E   + I  ++   +D   + G    + P   P  + G  +
Sbjct: 1706 GRVCPAP--CEGACTLGIIE-SPVGIKSVERAIIDKAWEEGW---IVPRP-PAERTG-RR 1757

Query: 740  IALIGGGPASIXCA 781
            +A+IG GPA +  A
Sbjct: 1758 VAIIGSGPAGLAAA 1771


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +2

Query: 692 TLDPNTKPLPKGGDHKIALIGGGPAS 769
           TLDP   P  K G   IALIG GP S
Sbjct: 247 TLDPEAFPTHKRGS--IALIGSGPGS 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,241
Number of Sequences: 5004
Number of extensions: 55744
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)