Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J15
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...   130   1e-30
AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical ...    29   5.7  

>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score =  130 bits (314), Expect = 1e-30
 Identities = 58/66 (87%), Positives = 63/66 (95%)
 Frame = +1

Query: 352 NFDDIKHTTLSERGALREAARCLKCADAPCQKSCPTQIDVKSFITSIANKNYYGAAKAIL 531
           +F DIKHTTLSERGAL+EA RCLKCADAPCQKSCPTQ+DVKSFITSI+NKNYYGAA+ IL
Sbjct: 73  DFRDIKHTTLSERGALKEAMRCLKCADAPCQKSCPTQLDVKSFITSISNKNYYGAARQIL 132

Query: 532 SDNPLG 549
           SDNPLG
Sbjct: 133 SDNPLG 138



 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 47/84 (55%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
 Frame = +2

Query: 542 PSGLTCGMVCPTSDLCVGGCNLHATEXGAIXIGGLQHFAVDIFMKMGXPPTLDPNTKPLP 721
           P GLTCGM+CPTSDLCVG CNL A+E GAI IGGLQ +A D+F +M     +    +   
Sbjct: 136 PLGLTCGMICPTSDLCVGSCNLQASEEGAINIGGLQQYACDVFKQMNVRQIVSKEVRE-N 194

Query: 722 KGGDHK--IALIGGGPASIXCAXF 787
           +   HK  +ALIG GPASI CA F
Sbjct: 195 RNASHKEQVALIGCGPASISCASF 218



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 33/60 (55%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
 Frame = +3

Query: 189 LLSKXLPDIEXLLKLNPTVKPYTNLVPSAQTKKXKQHWKRNADRKC-TTC--PTLXQEFR 359
           LLSK  PDIE LL LNP V+   N VPSA TKK K +WKRN ++ C +TC    L  +FR
Sbjct: 16  LLSKDSPDIESLLILNPKVQDKANAVPSAVTKKNKHNWKRNEEKGCGSTCGESKLKNDFR 75



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +3

Query: 786 FLARLGYKDITVYXKDXYLGGL 851
           FLARLGY DIT+Y K  Y+GGL
Sbjct: 218 FLARLGYTDITIYEKRAYIGGL 239


>AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical
           protein Y60A9.1 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 216 EXLLKLNPTVKPYTNLVPSAQTKKXKQHWKRNADRKCTTCPTLXQE-FRRYQTHDALRTW 392
           + ++  NP ++  T+ +P   +   +  W R ADR     P    E  RRY      ++ 
Sbjct: 55  QDIIPYNPHIRTRTSRLPIRPSSSRRISWSREADRVREISPRSEPEPIRRYDPPYLQKSQ 114

Query: 393 SFT 401
           SF+
Sbjct: 115 SFS 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,242
Number of Sequences: 27780
Number of extensions: 341177
Number of successful extensions: 748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)