Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J14
         (1114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.069
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.69 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.2  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect(3) = 0.069
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 769 PPPPPPXXPP 798
           PPPPPP  PP
Sbjct: 239 PPPPPPTLPP 248



 Score = 24.2 bits (50), Expect(2) = 5.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 763 PXPPPPPPXXPP 798
           P PPPPPP   P
Sbjct: 236 PAPPPPPPPTLP 247



 Score = 22.2 bits (45), Expect(3) = 0.069
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 763 PXPPPPPPXXP 795
           P P PPPP  P
Sbjct: 234 PLPAPPPPPPP 244



 Score = 21.8 bits (44), Expect(3) = 0.069
 Identities = 9/29 (31%), Positives = 9/29 (31%)
 Frame = +1

Query: 616 PPXXXXXXGGXKXXXXXPXXTXPXPPPPP 702
           PP               P    P PPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPP 195



 Score = 20.6 bits (41), Expect(2) = 5.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 682 PXPPPPP 702
           P PPPPP
Sbjct: 191 PPPPPPP 197


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect(2) = 0.69
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 763 PXPPPPPPXXPPXXXRP 813
           P PPPPPP   P    P
Sbjct: 9   PPPPPPPPGFEPPSQPP 25



 Score = 22.2 bits (45), Expect(2) = 0.69
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 667 PXXTXPXPPPPP 702
           P    P PPPPP
Sbjct: 5   PPGNPPPPPPPP 16


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 35/167 (20%), Positives = 37/167 (22%), Gaps = 1/167 (0%)
 Frame = +1

Query: 616  PPXXXXXXGGXKXXXXXPXXTXPXPPPPPXXGXXXXXXXXXXXXXXXXXPXPPPPPPXXP 795
            PP      G           + P PPPPP                      PPPPPP   
Sbjct: 315  PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSA-----PPPPPPRSA 369

Query: 796  PXXXR-PXARXXXPXXXPXXKXXPXXPXXXXXXXXPXXXXKXXXXPXXXTXXAXXXXXXX 972
            P   R P                P  P        P         P   T  +       
Sbjct: 370  PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429

Query: 973  HPXXXXPXPXXPXXPPXXXXXXPXXXXXXXPXXXXXPXXXPXPPAXP 1113
                  P P  P   P      P       P     P   P PPA P
Sbjct: 430  SLPPSAP-PSLPMGAP-AAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 2.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 763 PXPPPPPPXXPP 798
           P  PPPPP  PP
Sbjct: 942 PAFPPPPPPPPP 953



 Score = 22.2 bits (45), Expect(2) = 2.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 676 TXPXPPPPP 702
           T P PPPPP
Sbjct: 903 THPTPPPPP 911


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 763  PXPPPPPPXXPPXXXRPXARXXXPXXXP 846
            P PPPPP   PP    P      P   P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 972  PPPPPXPXPXXPXXPP 1019
            PPPPP   P  P  PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 763 PXPPPPPPXXPPXXXRP 813
           P PPPPPP   P    P
Sbjct: 3   PAPPPPPPAPAPAAAAP 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,532
Number of Sequences: 5004
Number of extensions: 14903
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 589685872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)