Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J12
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0196 + 21144094-21144483                                         31   1.2  
06_03_0554 - 22057957-22058014,22058093-22058426,22058446-220589...    30   2.9  
06_03_0219 - 18227559-18227858,18227864-18228340                       28   8.8  

>11_06_0196 + 21144094-21144483
          Length = 129

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 669 TLKSEVAKPDRTIKIQAVPPXKPPSCALLFPTLPXYRIP 785
           T KS VAKP    +  AV   KPP+ A+  P  P  R P
Sbjct: 69  TTKSAVAKPPAVAEPLAVAVIKPPAAAVAKPPWPQPRSP 107


>06_03_0554 -
           22057957-22058014,22058093-22058426,22058446-22058977,
           22059211-22059459,22059551-22059563,22059608-22059942
          Length = 506

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +3

Query: 657 SQKSTLKSEVAKPDRTIKIQAVPPXKPPSCALLFPTLPXYRIPV 788
           S K+++K+E+A  +   K++++   +P SC L    +P + +PV
Sbjct: 176 SNKASIKAELAS-EFDEKLESMRAKEPTSCTLTVRVMPTFTVPV 218


>06_03_0219 - 18227559-18227858,18227864-18228340
          Length = 258

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 678 SEVAKPDRTIKIQAVPPXKPPSCALLFPTLPXYRIPVRLSPLR 806
           S V +P       A PP  PP  AL FP  P   +P R  P R
Sbjct: 84  STVRRPAAPSPPPASPPPPPPRLALRFPRRPP-ELPPRRRPSR 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,782
Number of Sequences: 37544
Number of extensions: 274565
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)