Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J12
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical pr...    34   0.16 
U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protei...    29   4.5  

>U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical
           protein T25E4.1 protein.
          Length = 231

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 725 PLXAPLVRPPVSDPAXLPDTCPPFSPXGXRXXFSXLTL*VXPXRXXGRSPPTWXC 889
           P+ AP+VRP +  PA +    P  +P G       L +   P R   + PP   C
Sbjct: 82  PVAAPMVRPMLQQPAIVAPVAPVVAPVGQCPGGPSLPIECDPKRPWPQCPPQSYC 136


>U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protein
           164 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 695 RQDYKDTGRSPLXAPLVRPPVSDPAXLPDTCP 790
           RQ YK+ G +   +P    P + P  + D+CP
Sbjct: 74  RQTYKEGGAAGEGSPAATAPEASPVKIDDSCP 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,020
Number of Sequences: 27780
Number of extensions: 207000
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)