Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J05
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   116   5e-27
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    79   6e-16
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    70   4e-13
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    33   0.042
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    29   0.68 
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    29   0.90 
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    28   1.6  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    28   2.1  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    27   3.6  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   4.8  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   6.3  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   6.3  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    26   8.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   8.4  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    26   8.4  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  116 bits (279), Expect = 5e-27
 Identities = 54/92 (58%), Positives = 65/92 (70%)
 Frame = +3

Query: 249 KHGXMLTMHYTGTLXXGHKFDSSYDRXQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTI 428
           K G  +TMHYTGTL  G KFDSS DR  PF   IGVGQ+I+GWD+G+  M +GEK KLTI
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77

Query: 429 PASLGYGERGAGNVIPPHATLHFEVELINIGD 524
               GYG RG   +IPP++TL F+VEL+ I D
Sbjct: 78  TPDYGYGPRGFPGLIPPNSTLLFDVELLAIND 109


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
 Frame = +3

Query: 180 AGPXVTELKPXVV--SVPAGCTTXSKHGXMLTMHYTGTLXXGHKFDSSYDRXQPFTFQIG 353
           + P    LK  VV   V  G    + +G  + M Y G L  G  FD +  + +PF F +G
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN-TKGKPFAFILG 306

Query: 354 VGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 518
            G+VI+GWD G+  M  G +RK+TIPA + YG +     IP ++TL FEV+L+ +
Sbjct: 307 RGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 35/91 (38%), Positives = 56/91 (61%)
 Frame = +3

Query: 246 SKHGXMLTMHYTGTLXXGHKFDSSYDRXQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLT 425
           +K    ++M Y G L  G  FD +    +PFTF +G+ +VIKGWD G++ M VG +R + 
Sbjct: 273 AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIH 331

Query: 426 IPASLGYGERGAGNVIPPHATLHFEVELINI 518
           IPA++ YG +     IP ++ L F+V+L+ +
Sbjct: 332 IPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 26/68 (38%), Positives = 38/68 (55%)
 Frame = +3

Query: 546 FKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKN 725
           FK  D D+D  +S  E+  YL  +M+   G  + ED  Q+ +  DK + E+    DKD++
Sbjct: 99  FKIYDIDRDGYISNGEL--YLVLKMMV--GTNLRED--QLQQIVDKTIMEV----DKDRD 148

Query: 726 GFISHEEF 749
           G IS EEF
Sbjct: 149 GKISFEEF 156


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 669 ESHDKLVEEIFQHEDKDKNGFISHEEF-SGPKHDEL*MSLRSL 794
           ++ +K V +IF   DK+K+G ++ EEF  G K D   +S  SL
Sbjct: 143 DTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSL 185


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 497  EMQCSVGRNHVAGSALSVAQGCGNSQFTFLTNAHVKQALVPSL 369
            ++  ++GR H+AG  +    GC   Q +FL+   V   ++ SL
Sbjct: 996  QLSYNLGRLHIAGDYIFSCVGCRTLQRSFLSGLSVCTGIIDSL 1038


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 564 DKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHE 743
           D+DN    +E+S+++ ++ + +D  E  +D K  +       EE+ Q+E+  K      E
Sbjct: 415 DQDN----QEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQE 470

Query: 744 EFSGPKHDEL 773
           E   P   EL
Sbjct: 471 ELEFPDEVEL 480


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +3

Query: 501 VELINIGDSPPAT---NVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLE 671
           V + ++G SP A    ++  E+DAD +  +   E    + ++M   D  E          
Sbjct: 36  VVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEE--------- 86

Query: 672 SHDKLVEEIFQHEDKDKNGFISHEEFS 752
                V E F+  DKD NG+I+ EE +
Sbjct: 87  -----VREAFKVFDKDGNGYITVEELT 108


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 450 ERGAGN-VIPPHATLHFEVEL 509
           E G GN +IPP  + H+EVEL
Sbjct: 42  EPGHGNLIIPPDVSAHYEVEL 62


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 552 EIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIK 659
           E D +KDN +  EE +D    ++    GG+++ D K
Sbjct: 51  EADGEKDNGMDEEEQNDAQPSKIPWLPGGKINADEK 86


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 546 FKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQM 665
           F+ +   K+N+  R E+ +YL+ Q +P D     EDIK++
Sbjct: 307 FEILYNSKENVEKRTEIDEYLQIQPLPTD-----EDIKKI 341


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 504 ELINIGDSPPATNVFKEIDADKDNMLSREEVSDYLKK--QMVPADGGEVSEDIK 659
           E +N         V + I+   D    R++V DYLKK  Q +  +  E  E +K
Sbjct: 296 EKLNDASYDQTRRVLQYINGFSDGSRDRQDVEDYLKKVLQELLCEAEECKEKVK 349


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +3

Query: 504 ELINIGDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDI---KQMLES 674
           ++IN    P     F +  A K  M +   V D++KK  +P  G +  ED    KQ    
Sbjct: 416 KMINYLQKPVQHEAFFKKYASKKFMKASLFVRDWIKKNSIPL-GDDADEDYTFHKQKRIQ 474

Query: 675 HDKLVEE 695
           HD   EE
Sbjct: 475 HDMKDEE 481


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 447 GERGAGNVIPPHATLHFEVELINIGDSP 530
           G+ G+G + P  AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 480 HATLHFEVELINIGDSPPATNVFKEIDADKDNMLSREEVSD-YLKKQ 617
           H  L+ + ELI+   S     VF+ ID    N+  R+   D Y+K++
Sbjct: 265 HKDLNEDEELISSSPSEVGKRVFRLIDLSTGNVYRRDTGGDIYVKRK 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,197
Number of Sequences: 5004
Number of extensions: 61067
Number of successful extensions: 203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)