Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J04
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...   100   5e-22
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   4.5  

>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 40/113 (35%), Positives = 67/113 (59%)
 Frame = +2

Query: 353 RNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGA 532
           R +    FCK+FN +TA      P+P ++ V   R++   IH PP S+ + +   + KG+
Sbjct: 31  RGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFTFTIHTPPTSWLISKTLDLEKGS 90

Query: 533 MEPVRETSGKITLKHLYEIAKIKQQDPPLXWKSLXDICTXLIATARTCGIEIV 691
             P+ +  G+++LKH+YEIAK+K  DP L    L  +C  +I TA++ G+++V
Sbjct: 91  SSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLCKSVIGTAKSMGVKVV 143


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 699 NSLTISIPHVLAVAINXVQMSXSDFHXKGGSCCFIF 592
           +S  I+ PH  A AI  +    SDF  K  S    F
Sbjct: 380 HSCAINFPHTAATAIQYLLSHISDFQSKSASSVLSF 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,427
Number of Sequences: 5004
Number of extensions: 54665
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)