Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J04
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0315 - 16686830-16687297                                        101   6e-22
03_01_0152 - 1211859-1211903,1212247-1212443,1213469-1213532,121...    85   5e-17
01_06_0382 - 28884450-28884662,28884681-28885469                       29   4.8  
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581...    29   6.3  
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813...    28   8.3  

>10_08_0315 - 16686830-16687297
          Length = 155

 Score =  101 bits (243), Expect = 6e-22
 Identities = 47/114 (41%), Positives = 67/114 (58%)
 Frame = +2

Query: 359 INIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAME 538
           +N+ AFCKDFN +T   K   P+   +    D ++  V+  P  S+FLK+AAGI   +  
Sbjct: 42  LNLMAFCKDFNARTQKYKAETPMQVTLTAYKDSTFEFVVKSPSVSWFLKKAAGIETASGR 101

Query: 539 PVRETSGKITLKHLYEIAKIKQQDPPLXWKSLXDICTXLIATARTCGIEIVKEL 700
           P       ++L+H+YEIAK+KQ DP     SL  +C  +I TA + GIEIVK+L
Sbjct: 102 PGHTVVSSLSLRHVYEIAKLKQSDPYCKHMSLEALCKSIIGTANSMGIEIVKDL 155


>03_01_0152 -
           1211859-1211903,1212247-1212443,1213469-1213532,
           1213630-1213802,1213889-1214075
          Length = 221

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 45/112 (40%), Positives = 64/112 (57%)
 Frame = +2

Query: 353 RNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGA 532
           + +NI +FCK++N KTA  K G  +P  + V  D+S+  ++  PPAS  L +AAGI KG+
Sbjct: 89  KGVNIMSFCKEYNAKTAE-KAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGIEKGS 147

Query: 533 MEPVRETSGKITLKHLYEIAKIKQQDPPLXWKSLXDICTXLIATARTCGIEI 688
            EP RE  GK+T   +  IA+ K   P L  KS+      +  TA   GIE+
Sbjct: 148 KEPQREKVGKVTADQVRTIAQEKL--PDLNCKSIDSAMRIIAGTAANMGIEV 197


>01_06_0382 - 28884450-28884662,28884681-28885469
          Length = 333

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 407 IKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSG 559
           +K  +P P  V V+ DR++ +V H  P   F     G   G  E   +  G
Sbjct: 209 LKTDLPYPNGVAVSRDRTHLVVAHTVPCQAFRYWLRGTKAGEYELFADLPG 259


>01_06_0575 -
           30357556-30357582,30357698-30357944,30358039-30358161,
           30358275-30358301,30358475-30358633,30359764-30359948,
           30360225-30360293,30360432-30362354,30363018-30363339,
           30363506-30363543
          Length = 1039

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 386 FNEKTANIKQG-IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRET 553
           +N  + +++Q  I   T + VNS R+ H+ +HQPP   + K           P+ ++
Sbjct: 727 WNSGSQSVRQAEIKRATTINVNS-RARHINLHQPPQEKYQKSTFSYDDPTSAPIYQS 782


>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
            8136560-8136655,8136746-8136874,8136947-8137123,
            8137256-8137366,8138592-8138792,8139022-8139186,
            8139293-8139527,8139618-8139745,8139833-8139928,
            8140017-8140112,8140252-8140325,8140393-8140462,
            8140556-8140665,8140753-8140906,8141040-8141155,
            8141259-8141379,8141464-8141641,8142331-8142489,
            8142619-8142732,8142821-8143000,8143098-8143177
          Length = 1117

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 419  IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKIT 568
            I L TRV+ + D+ + LV+H+   + +  +   +      PVRE S  IT
Sbjct: 957  IILDTRVQFHQDQLHFLVVHETQIAIY--ETTKLEPVKQWPVRENSSPIT 1004


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,507
Number of Sequences: 37544
Number of extensions: 303773
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)