Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J04
         (862 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005002-1|AAH05002.1|  192|Homo sapiens mitochondrial ribosomal...   130   5e-30
AK223112-1|BAD96832.1|  192|Homo sapiens mitochondrial ribosomal...   130   5e-30
AF151871-1|AAD34108.1|  192|Homo sapiens CGI-113 protein protein.     130   5e-30
AB049638-1|BAB40843.1|  192|Homo sapiens mitochondrial ribosomal...   130   5e-30
BC108277-1|AAI08278.1|  166|Homo sapiens mitochondrial ribosomal...   129   1e-29
AB051338-1|BAB54928.1|   61|Homo sapiens mitochondrial ribosomal...    63   1e-09

>BC005002-1|AAH05002.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 192

 Score =  130 bits (315), Expect = 5e-30
 Identities = 62/131 (47%), Positives = 88/131 (67%), Gaps = 2/131 (1%)
 Frame = +2

Query: 350 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 529
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 530 AMEPVRETSGKITLKHLYEIAKIKQQDPPLXWKS--LXDICTXLIATARTCGIEIVKELD 703
           A +  +E +G +TLKH+YEIA+IK QD     +   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 704 PKEYGEFLEXR 736
            +E   F + R
Sbjct: 161 SEELAAFQKER 171


>AK223112-1|BAD96832.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 isoform a variant protein.
          Length = 192

 Score =  130 bits (315), Expect = 5e-30
 Identities = 62/131 (47%), Positives = 88/131 (67%), Gaps = 2/131 (1%)
 Frame = +2

Query: 350 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 529
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 530 AMEPVRETSGKITLKHLYEIAKIKQQDPPLXWKS--LXDICTXLIATARTCGIEIVKELD 703
           A +  +E +G +TLKH+YEIA+IK QD     +   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 704 PKEYGEFLEXR 736
            +E   F + R
Sbjct: 161 SEELAAFQKER 171


>AF151871-1|AAD34108.1|  192|Homo sapiens CGI-113 protein protein.
          Length = 192

 Score =  130 bits (315), Expect = 5e-30
 Identities = 62/131 (47%), Positives = 88/131 (67%), Gaps = 2/131 (1%)
 Frame = +2

Query: 350 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 529
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 530 AMEPVRETSGKITLKHLYEIAKIKQQDPPLXWKS--LXDICTXLIATARTCGIEIVKELD 703
           A +  +E +G +TLKH+YEIA+IK QD     +   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 704 PKEYGEFLEXR 736
            +E   F + R
Sbjct: 161 SEELAAFQKER 171


>AB049638-1|BAB40843.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 (L11mt) protein.
          Length = 192

 Score =  130 bits (315), Expect = 5e-30
 Identities = 62/131 (47%), Positives = 88/131 (67%), Gaps = 2/131 (1%)
 Frame = +2

Query: 350 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 529
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 530 AMEPVRETSGKITLKHLYEIAKIKQQDPPLXWKS--LXDICTXLIATARTCGIEIVKELD 703
           A +  +E +G +TLKH+YEIA+IK QD     +   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 704 PKEYGEFLEXR 736
            +E   F + R
Sbjct: 161 SEELAAFQKER 171


>BC108277-1|AAI08278.1|  166|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 166

 Score =  129 bits (312), Expect = 1e-29
 Identities = 61/131 (46%), Positives = 88/131 (67%), Gaps = 2/131 (1%)
 Frame = +2

Query: 350 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 529
           +R ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 15  ERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 74

Query: 530 AMEPVRETSGKITLKHLYEIAKIKQQDPPLXWKS--LXDICTXLIATARTCGIEIVKELD 703
           A +  +E +G +TLKH+YEIA+IK QD     +   L  +   +I +AR+ GI +VK+L 
Sbjct: 75  ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 134

Query: 704 PKEYGEFLEXR 736
            +E   F + R
Sbjct: 135 SEELAAFQKER 145


>AB051338-1|BAB54928.1|   61|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 61

 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 29/46 (63%), Positives = 35/46 (76%)
 Frame = +2

Query: 473 IHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQD 610
           I QP  SYFLK AAGI KGA +  +E +G +TLKH+YEIA+IK QD
Sbjct: 2   IGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQD 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,351,624
Number of Sequences: 237096
Number of extensions: 1734548
Number of successful extensions: 2891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2891
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)