Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_J04
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M77697-10|AAA27905.1| 195|Caenorhabditis elegans Hypothetical p... 146 1e-35
U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase ... 31 1.4
AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator prot... 31 1.4
AC006695-16|AAK71874.1| 364|Caenorhabditis elegans Seven tm rec... 30 1.8
AL023856-7|CAA19563.2| 326|Caenorhabditis elegans Hypothetical ... 30 2.4
U80030-4|AAG24162.2| 370|Caenorhabditis elegans Serpentine rece... 29 4.3
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 29 5.6
Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical pr... 28 9.8
>M77697-10|AAA27905.1| 195|Caenorhabditis elegans Hypothetical
protein B0303.15 protein.
Length = 195
Score = 146 bits (355), Expect = 1e-35
Identities = 81/182 (44%), Positives = 106/182 (58%), Gaps = 1/182 (0%)
Frame = +2
Query: 221 SKSVARLKSMRKVAEKIDHSSKMRTNIXXXXXXXXXXXXXXXXQRNINIAAFCKDFNEKT 400
SK AR++ +K K+ H + +RTNI QR +N+A FCK+FN++T
Sbjct: 3 SKGAARVR--KKEIVKVVHGALLRTNIKAQMASAAPPLGPQLGQRGLNVANFCKEFNKET 60
Query: 401 ANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHL 580
+ KQG+PLPTR+ V DR+Y L I P ++ LKQAAGI +G E GK+T+KHL
Sbjct: 61 GHFKQGVPLPTRITVKPDRTYDLEICTPTTTWLLKQAAGIGRGKASK-DEIVGKLTVKHL 119
Query: 581 YEIAKIKQQDPPLXWKSLXDICTXLIATARTCGIEI-VKELDPKEYGEFLEXRKXIVEXX 757
YEIAKIK +D L L IC LI T RT GI++ +LDP E EFL RK V+
Sbjct: 120 YEIAKIKSRDKALQHVPLEQICRMLIKTCRTLGIDVQYHDLDPVELKEFLVARKEKVDAQ 179
Query: 758 XK 763
K
Sbjct: 180 LK 181
>U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase
transcriptionalregulation mediator protein.
Length = 246
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 473 IHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAK 595
+HQ P Y L Q+ + GA+EP+R G++T Y AK
Sbjct: 111 VHQAPDMYSLVQSRLL--GALEPLRNAFGEVTNYSRYNTAK 149
>AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator protein
6 protein.
Length = 250
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 473 IHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAK 595
+HQ P Y L Q+ + GA+EP+R G++T Y AK
Sbjct: 115 VHQAPDMYSLVQSRLL--GALEPLRNAFGEVTNYSRYNTAK 153
>AC006695-16|AAK71874.1| 364|Caenorhabditis elegans Seven tm
receptor protein 206 protein.
Length = 364
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 615 GGSCCFIFAISYKCFKVIFPLVSLTGSMAP 526
G S C IF +KC+K + L SL+ +P
Sbjct: 213 GSSLCTIFYFGWKCYKALSDLQSLSSGYSP 242
>AL023856-7|CAA19563.2| 326|Caenorhabditis elegans Hypothetical
protein Y94A7B.1 protein.
Length = 326
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 454 IRINFHSCW*--RYSLLNVSSLLIKIFTESGYIDIPLTQHRA 335
I + H+CW RYS L ++ +L +F + Y++IP Q A
Sbjct: 119 ILFSMHTCWRYIRYSFLTMNYVLTILFVITVYVEIPEDQEFA 160
>U80030-4|AAG24162.2| 370|Caenorhabditis elegans Serpentine
receptor, class w protein120 protein.
Length = 370
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -1
Query: 595 FCYFIQMLQSYFPTGFSNRFHGSFTYSSSLF*KI*SRWLMYYKMIRTIRINFHSCW*RYS 416
FC I FP G S F F Y S + SR L Y+ I ++ I ++C +
Sbjct: 274 FCVTITFFIVEFPYGLSLGFLWMFDYDSGI-----SRILSYFGFIFSVLITLNTCTHLFV 328
Query: 415 LLNVSS 398
L +SS
Sbjct: 329 CLIISS 334
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 469 KMIRTIRINFHSCW*RYSLLNVSSLLIKIFTESGYIDIPLT 347
+M R I FH W R S L V S+L+++ ++ +T
Sbjct: 566 EMARVYGIQFHEVWTRGSQLRVESMLLRLAHRMNFVAPSIT 606
>Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical
protein ZK593.1 protein.
Length = 515
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +2
Query: 497 FLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLXWKSLXDICTXLIATARTC 676
F++ A GI K +R+ G+ KH+Y IAKI+ +D + + ++
Sbjct: 228 FIRNADGIHK-----IRQVLGEKG-KHIYIIAKIESEDGVTNCDEIIEASDGVMVARGDL 281
Query: 677 GIEIVKE 697
GIEI E
Sbjct: 282 GIEIPAE 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,528,194
Number of Sequences: 27780
Number of extensions: 291728
Number of successful extensions: 599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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