Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_J03
         (1336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    36   0.017
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.48 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.63 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   7.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 1076 PHTSXSXPPXPLPLXXTRXPPLALXXSXPPLPQHPXSARXXPAPARXXSLXTTSXPPP 1249
            P  S   PP P+P   +  PP+ +  S PP+P+    A   P P    S    S P P
Sbjct: 1025 PLPSADAPPIPVP---STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +2

Query: 1076 PHTSXSXPPXPLPLXXTRXPPLALXXSXPPLPQHPXSARXXPAPARXXSLXTTSXPPP 1249
            P  S + PP P P      PP+      PP+P+   +A   P P+    +   S   P
Sbjct: 1095 PKPSVAAPPVPKP--SVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP 1150



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +2

Query: 1076 PHTSXSXPPXPLPLXXTRXPPLALXXSXPPLPQHPXSARXXPAPARXXSLXTTSXPPP 1249
            P  S   PP PLP      PP+ +  + PP+P  P S      P    S    S PPP
Sbjct: 1015 PKLSSKAPPVPLP--SADAPPIPVPSTAPPVP-IPTST----PPVPKSSSGAPSAPPP 1065



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 1076 PHTSXSXPPXPLPLXXTRXPPLALXXSXPPLPQHPXSARXXPAPARXXSLXTTSXPPP 1249
            P  + S  P P+P      PP+ +    PP+P+   +A   PAP+    +   S   P
Sbjct: 1113 PVPAPSGAP-PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 1106 PLPLXXTRXPPLALXXSXPPLPQHPXSARXXPAPA 1210
            P+P      PP+      PP+P+   +A   PAP+
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175



 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +2

Query: 1076 PHTSXSXPPXPLPLXXTRXPPLALXXSXPPLPQHPXSARXXPAPARXXSLXTTSXPPP 1249
            P  S   PP P P      PP+      PP+P+        P P+    + T S   P
Sbjct: 1172 PAPSSGIPPVPKPA--AGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
 Frame = +2

Query: 1097 PPXPLPLXXTRXPPLALXX--SXPPLPQHPXSARXXPAPARXXSLXTTSXPPPXTXSHCA 1270
            PP   P    + PPL+     S PP P      R  PA     +   TS PP  T     
Sbjct: 365  PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424

Query: 1271 XXXXHSLRPS 1300
                 SL PS
Sbjct: 425  PSAPPSLPPS 434



 Score = 30.3 bits (65), Expect = 0.63
 Identities = 19/55 (34%), Positives = 20/55 (36%)
 Frame = +2

Query: 1085 SXSXPPXPLPLXXTRXPPLALXXSXPPLPQHPXSARXXPAPARXXSLXTTSXPPP 1249
            S S PP P P        LA     PP P  P S R    P        +S PPP
Sbjct: 286  STSKPPLPPPSSRVSAAALAANKKRPP-PPPPPSRRNRGKPPIGNGSSNSSLPPP 339


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 23/73 (31%), Positives = 26/73 (35%)
 Frame = +1

Query: 916  PXHXPXPPXPTSPXRXPSSXPPXXSXXXXXXXXXSHTQXXXXXXXXXXRXXPXPSHLXLX 1095
            P   P PP P S  R P+S PP  S                       +  P PS   L 
Sbjct: 124  PPSAPAPPTPQSELRPPTSAPPRPSIP---------PPSPASAPPIPSKAPPIPS--SLP 172

Query: 1096 XPXXPASPPXSPP 1134
             P  PA+P  SPP
Sbjct: 173  PPAQPAAPVKSPP 185


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +2

Query: 1091 SXPPXPLPLXXTRXPPLALXXSXPPLPQHPXSARXXPAPA 1210
            S P  P P      PP     S PP+P  P SA   P PA
Sbjct: 1703 SAPTPPPPPMSVPPPP-----SAPPMPAGPPSAPPPPLPA 1737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,870
Number of Sequences: 5004
Number of extensions: 16070
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 733268682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)