Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_I20
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 6.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 6.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 6.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 24 9.3
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 286 GGPXPPQKKXXXKXG-GXFXPPPPGG 212
GGP P + G G F PPPPGG
Sbjct: 415 GGPGAPGSYGPPQGGPGGFGPPPPGG 440
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 304 PPXXXXGGPXPPQKKXXXKXGGXFXPPPPGG 212
PP P PP GG PPPPGG
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGG 750
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -2
Query: 304 PPXXXXGG--PXPPQKKXXXKXGGXFXPPPPG 215
PP GG P PP GG PPPPG
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 304 PPXXXXGGPXPPQKKXXXKXGGXFXPPPPGG 212
PP P PP GG PPPPGG
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGG 750
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -2
Query: 304 PPXXXXGG--PXPPQKKXXXKXGGXFXPPPPG 215
PP GG P PP GG PPPPG
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 304 PPXXXXGGPXPPQKKXXXKXGGXFXPPPPGG 212
PP P PP GG PPPPGG
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGG 333
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -2
Query: 304 PPXXXXGG--PXPPQKKXXXKXGGXFXPPPPG 215
PP GG P PP GG PPPPG
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 280 PXPPQKKXXXKXGGXFXPPPPGGXLXGG 197
P PP + GG PPPPG GG
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGG 346
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 280 PXPPQKKXXXKXGGXFXPPPPGGXLXGG 197
P PP + GG PPPPG GG
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGG 356
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -2
Query: 301 PXXXXGGPXPPQKKXXXKXGGXFXPPPPGGXL 206
P G P PP G PPPPGG +
Sbjct: 569 PQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLM 600
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 23.8 bits (49), Expect(2) = 9.3
Identities = 11/35 (31%), Positives = 11/35 (31%)
Frame = +2
Query: 503 PPPXGXXXXPXXXXKXGXPPXPPXXXXXXXFXXPP 607
PPP P G PP PP PP
Sbjct: 96 PPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPP 130
Score = 22.2 bits (45), Expect(2) = 9.3
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +2
Query: 359 PPPXXXXXXRGXXFFFXGXPPPP 427
PPP F G PPPP
Sbjct: 76 PPPGPGGIPPPPPMFAGGIPPPP 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,907,280
Number of Sequences: 27780
Number of extensions: 205539
Number of successful extensions: 342
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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