Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_I18
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.8  
06_03_0335 + 19662933-19663334,19663358-19664023                       29   6.5  
06_03_0218 + 18219956-18220555                                         29   6.5  
03_06_0149 - 31987183-31987630,31987813-31987874                       29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  
03_04_0061 - 16949038-16950006                                         28   8.6  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 596 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 477
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>06_03_0335 + 19662933-19663334,19663358-19664023
          Length = 355

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -1

Query: 749 RAHSPA*ANDLHRTEIPTA*AMRKRHASRREKXGQVSGKRQGRNRRAHEGASRG 588
           R H P  A  LH   +P A   R+R A RR   G+V+        R   GA+ G
Sbjct: 140 RLHRPLAARPLHVPGVPRAPGARRRAAQRRR--GRVAAAAAAAPVRPVAGAAHG 191


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 668 SRREKXGQVSG--KRQGRNRRAHEGASRGKRLVS 573
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 689 AMRKRHASRREKXGQVSGKRQGRNRRAHEGASRG 588
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 260 NESAN---ARGEAVCVLGALPLPRSLTRCAR 343
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 563 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 679
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,939,783
Number of Sequences: 37544
Number of extensions: 432475
Number of successful extensions: 1249
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)