Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_I13
(1174 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 2.1
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 25 3.1
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 25 3.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.8
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 25 5.3
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 25 5.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 8.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 8.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 8.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 8.4
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 2.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PPP + PPPP PP G
Sbjct: 289 PPPSSGMWPPPPPPPPG 305
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 2.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PPP + PPPP PP G
Sbjct: 299 PPPSSGMWPPPPPPPPG 315
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PP PPPP PP G
Sbjct: 801 PPISSGAPPPPPPPPPG 817
Score = 23.0 bits (47), Expect(2) = 3.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 734 PPPPXPPXGV 763
PPPP PP G+
Sbjct: 810 PPPPPPPGGL 819
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PP PPPP PP G
Sbjct: 801 PPISSGAPPPPPPPPPG 817
Score = 23.0 bits (47), Expect(2) = 3.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 734 PPPPXPPXGV 763
PPPP PP G+
Sbjct: 810 PPPPPPPGGL 819
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PPP PPPP PP G
Sbjct: 762 PPPPGGCPPPPPPPPPG 778
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PPP PPPP PP G
Sbjct: 762 PPPPGGCPPPPPPPPPG 778
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 698 CXXGPPPXXSLXPPPPXPP 754
C PPP PPPP PP
Sbjct: 39 CAPPPPPMCGCAPPPPPPP 57
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PPP PPPP PP G
Sbjct: 345 PPPPGGCPPPPPPPPPG 361
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 707 GPPPXXSLXPPPPXPPXG 760
GPPP + PP P PP G
Sbjct: 1591 GPPPRLGMPPPGPPPPNG 1608
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 24.6 bits (51), Expect(2) = 5.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 707 GPPPXXSLXPPPPXPP 754
G P S PPPP PP
Sbjct: 621 GMAPISSAAPPPPPPP 636
Score = 23.0 bits (47), Expect(2) = 5.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 734 PPPPXPPXGV 763
PPPP PP G+
Sbjct: 632 PPPPPPPMGL 641
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 24.6 bits (51), Expect(2) = 5.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 707 GPPPXXSLXPPPPXPP 754
G P S PPPP PP
Sbjct: 447 GMAPISSAAPPPPPPP 462
Score = 23.0 bits (47), Expect(2) = 5.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 734 PPPPXPPXGV 763
PPPP PP G+
Sbjct: 458 PPPPPPPMGL 467
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PPP + PPPP PP G
Sbjct: 289 PPPPRAGSPPPPPPPRG 305
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PPP + PPPP PP G
Sbjct: 310 PPPPRAGSPPPPPPPRG 326
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXG 760
PPP + PPPP PP G
Sbjct: 295 PPPPRAGSPPPPPPPRG 311
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 710 PPPXXSLXPPPPXPPXGV 763
PPP PPPP PP G+
Sbjct: 582 PPPMLGGPPPPPPPPGGL 599
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,933,143
Number of Sequences: 27780
Number of extensions: 59257
Number of successful extensions: 1212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3203378606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -