Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_I12
         (982 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.035
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.046
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.035
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 877 PPXXXPPPXPPPXXXXXXXXXXPPPPPP 960
           P    PPP PPP          PPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 880 PXXXPPPXPPPXXXXXXXXXXPPPPPP 960
           P   P P P P          PPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.046
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 877 PPXXXPPPXPPPXXXXXXXXXXPPPPPP 960
           PP   PPP PPP          PPPPPP
Sbjct: 5   PPGNPPPPPPPP--GFEPPSQPPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 877 PPXXXPPPXPPPXXXXXXXXXXPPPPPP 960
           PP   PP    P          PPPPPP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPP 195


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
 Frame = +1

Query: 892 PPPXPPPXXXXXXXXXXPP-----PPPP 960
           PPP PPP          PP     PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,118
Number of Sequences: 5004
Number of extensions: 24175
Number of successful extensions: 254
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)