Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_I12
         (982 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect(2) = 2.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 943  PPPPPP 960
            PPPPPP
Sbjct: 1357 PPPPPP 1362



 Score = 20.6 bits (41), Expect(2) = 2.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 892  PPPXPPP 912
            PPP PPP
Sbjct: 1355 PPPPPPP 1361


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 103 LFLFTGVLIATCLTSVMXXXPTTEPICXQAFGDVGPS 213
           + L  GVL+    T ++   PTT     Q FG VG S
Sbjct: 555 IILLAGVLVCYLNTFLLLATPTTVTCILQRFG-VGVS 590


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 103 LFLFTGVLIATCLTSVMXXXPTTEPICXQAFGDVGPS 213
           + L  GVL+    T ++   PTT     Q FG VG S
Sbjct: 645 IILLAGVLVCYLNTFLLLATPTTVTCILQRFG-VGVS 680


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 877 PPXXXPPPXPP 909
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 169 TEPICXQAFGDVGPSGAY 222
           T+P+C +AF +  P G +
Sbjct: 407 TKPMCVEAFQEFPPLGRF 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,912
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)