Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_I07
         (982 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      27   0.17 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      27   0.17 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.29 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.68 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   4.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 30/127 (23%), Positives = 37/127 (29%)
 Frame = +1

Query: 187 PGXXARPXXRARRXXGGANXXXXPPXPXPXPPGXXGPVXPAPQPXXXXXAAXAXXRPTPX 366
           P     P  +      G+     PP   P P G      P   P     AA +   P+  
Sbjct: 139 PAHMGIPPYQLDSKTAGSMGLTRPPM-YPFPAGQYP--YPILSPEMSQVAA-SWHTPSMY 194

Query: 367 PXAPPXXXXAXPPPPPXXPXPXPPXXPXXPAXXPXXRXPPXPXPPPXPPXXXAAPAXPXP 546
           P +P     +  P P   P              P    PP P   P PP   + PA   P
Sbjct: 195 PLSPGAGFRS--PYPSALPISTSSLPSDFYRFSPTGLIPPHPGLSPHPPHLSSHPAIVTP 252

Query: 547 XPXXXPP 567
            P    P
Sbjct: 253 GPKQELP 259


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 30/127 (23%), Positives = 37/127 (29%)
 Frame = +1

Query: 187 PGXXARPXXRARRXXGGANXXXXPPXPXPXPPGXXGPVXPAPQPXXXXXAAXAXXRPTPX 366
           P     P  +      G+     PP   P P G      P   P     AA +   P+  
Sbjct: 31  PAHMGIPPYQLDSKTAGSMGLTRPPM-YPFPAGQYP--YPILSPEMSQVAA-SWHTPSMY 86

Query: 367 PXAPPXXXXAXPPPPPXXPXPXPPXXPXXPAXXPXXRXPPXPXPPPXPPXXXAAPAXPXP 546
           P +P     +  P P   P              P    PP P   P PP   + PA   P
Sbjct: 87  PLSPGAGFRS--PYPSALPISTSSLPSDFYRFSPTGLIPPHPGLSPHPPHLSSHPAIVTP 144

Query: 547 XPXXXPP 567
            P    P
Sbjct: 145 GPKQELP 151


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
 Frame = +2

Query: 338 PXPXHAXP-PXPPPPXXXPXXXPPXPPGPPXPXXPPXPXXXXXP 466
           P P    P P  PP        PP P  PP P  P  P     P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 26.2 bits (55), Expect = 0.39
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = +1

Query: 400 PPPPPXXPXPX-PPXXPXXPAXXPXXRXPPXPXPPPXPP 513
           P P    P P  PP         P  + PP P PP  PP
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 448 GGGXXGGXGGXXGXGGG 398
           GGG  GG  G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +2

Query: 530 PPPXPXXPXPPXXXXXXPPPRXPPPP 607
           PPP P     P        P   PPP
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPP 36



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 846 PXPXPAPPXPPP 881
           P P P+ P PPP
Sbjct: 205 PEPVPSTPYPPP 216


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 861 APPXPPPP 884
           APP PPPP
Sbjct: 730 APPPPPPP 737


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,595
Number of Sequences: 336
Number of extensions: 4962
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27823477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)