Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_I06
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 24/107 (22%), Positives = 30/107 (28%), Gaps = 4/107 (3%)
 Frame = +3

Query: 708  PXXXPCSXXXXXPXXXHHHYSXPNTXRAAIXGXXSPPXXPXXSXXI----PTSSXPSXPX 875
            P   P +     P       S P     AI G  +P   P  +       P  + PS P 
Sbjct: 366  PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425

Query: 876  XLPRKXXRXSXPLXRXAAVXXXPSXVXXXVVXPXPXXPPXPAXTPPA 1016
              P      + P     A    P      +  P P   P     PPA
Sbjct: 426  SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 22/92 (23%), Positives = 30/92 (32%)
 Frame = +3

Query: 768  SXPNTXRAAIXGXXSPPXXPXXSXXIPTSSXPSXPXXLPRKXXRXSXPLXRXAAVXXXPS 947
            S P   +++     +PP  P  S  IP+   PS    +P        P    AA      
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107

Query: 948  XVXXXVVXPXPXXPPXPAXTPPAXXX*XXSGS 1043
             V    V      PP P  +  A      SG+
Sbjct: 1108 SVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,918
Number of Sequences: 5004
Number of extensions: 8658
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)