Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_I04
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 39 0.006
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.033
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 36 0.057
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 33 0.30
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 32 0.70
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 31 0.93
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 31 0.93
03_05_0039 - 20125473-20126222 30 2.8
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 28 8.6
06_03_1177 + 28174909-28175016,28176386-28176484,28177188-281772... 28 8.6
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 38.7 bits (86), Expect = 0.006
Identities = 32/92 (34%), Positives = 39/92 (42%)
Frame = +3
Query: 363 WKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLG 542
++VLL+E GG+P I NM D T P A R G R +VLG
Sbjct: 71 FRVLLLERGGSPYDDERI-----GNMTRFADTLSDTSPSSPAQRFVSEDGVINSRPRVLG 125
Query: 543 GSSSINLMFYVRGNKADYDEWAADGNEGWSFE 638
G S IN FY R + DE+ GW E
Sbjct: 126 GGSCINAGFYTRAS----DEYVR--GLGWDLE 151
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 36.3 bits (80), Expect = 0.033
Identities = 28/80 (35%), Positives = 36/80 (45%)
Frame = +3
Query: 345 LSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWP 524
LSE S +VLL+E GG P + Y+ D T P+ A R G
Sbjct: 75 LSERS--RVLLLERGGLPYGNRNVSSEYHF-----ADALADTSPRSPAQRFVSEDGVVNA 127
Query: 525 RGKVLGGSSSINLMFYVRGN 584
R +VLGG S +N FY R +
Sbjct: 128 RARVLGGGSCLNAGFYTRAS 147
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 35.5 bits (78), Expect = 0.057
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Frame = +3
Query: 288 NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSE---DW 458
+Y++I LSE S +VLL+E GG P Y+NM + + D
Sbjct: 53 SYNYIVIGGGTAGCPLAATLSEHS--RVLLLERGGLP----------YANMSSEQHFTDA 100
Query: 459 AYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGN 584
T P A R G R +VLGG S +N FY R +
Sbjct: 101 LADTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRAS 142
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/98 (29%), Positives = 42/98 (42%)
Frame = +3
Query: 291 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHT 470
YD+I LS+ +KVLL+E GG+P I ++ ++D
Sbjct: 50 YDYIIVGGGTAGCPLAATLSQ--KYKVLLLERGGSPYGNRNISHLENFHICLADDSP--N 105
Query: 471 EPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGN 584
P +G G R KVLGG +S+N FY R +
Sbjct: 106 SPSQGFI---STDGVINARAKVLGGGTSVNAGFYSRAD 140
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 31.9 bits (69), Expect = 0.70
Identities = 29/96 (30%), Positives = 38/96 (39%)
Frame = +3
Query: 291 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHT 470
YD+I LSE ++VLL+E GG+P + NM D T
Sbjct: 43 YDYIIIGGGTAGCPLAATLSE--RYRVLLLERGGSPYDDARV-----LNMAHFADVLADT 95
Query: 471 EPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVR 578
+ R G R +VLGG S IN F+ R
Sbjct: 96 SGASPSQRFVSEDGVINARPRVLGGGSCINAGFFTR 131
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 31.5 bits (68), Expect = 0.93
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +3
Query: 363 WKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLG 542
+KVLL+E GG+P + ++G S + P + G R +VLG
Sbjct: 73 YKVLLLERGGSPYGNRNVSYMENFHIGLS-----NMAPDSASQAFISTDGVINARARVLG 127
Query: 543 GSSSINLMFYVRGN 584
G + IN FY R +
Sbjct: 128 GGTCINAGFYSRAS 141
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 31.5 bits (68), Expect = 0.93
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Frame = +3
Query: 258 DATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSN 437
DA + E+ YD+I L+ +VL++E GG P E P P +
Sbjct: 45 DAAETAAEEA-YDYIVVGGGTAGCPLAATLAGPGGGRVLVLERGGAPA---EFP-PLATA 99
Query: 438 MGTSEDWAYHTEPQEGACRAY---KNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWA 608
G A E A G R +VLGG++SIN FY R + D+
Sbjct: 100 GGFVRTLAMADPAPESDAPAQTFASEDGVPNVRARVLGGATSINAGFYSRAH-PDWFRSH 158
Query: 609 ADGNEGWSFE 638
+G E +++
Sbjct: 159 GEGGEAMNWD 168
>03_05_0039 - 20125473-20126222
Length = 249
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 507 KGCAWPRGKVLGGSSSINLMFY 572
+GCA GKVLGGS S+ FY
Sbjct: 223 RGCAKEGGKVLGGSCSLRYDFY 244
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -1
Query: 552 CCFH--RAPYHVAKRIPCFCRHDKPLPVVQYGKPSLL 448
CCFH R Y++ ++ CF P KP+ L
Sbjct: 375 CCFHGRRKQYYLGSKVTCFGSEQHCAPKYSINKPAWL 411
>06_03_1177 +
28174909-28175016,28176386-28176484,28177188-28177238,
28177394-28177517,28177765-28177883,28177954-28178055,
28178124-28178198,28178390-28178466,28178920-28179169,
28179311-28179664,28179807-28179941,28180097-28180225
Length = 540
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 403 WQPRYRNLTTVIWAHQKTGLTILNHRKGLVVPTKTRDALGHV 528
W ++ + K + +++ R+GL +P + +++LGHV
Sbjct: 463 WNEEFQFMVDEAPVDDKIHIEVVSKRRGLRLPFRNKESLGHV 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,466,246
Number of Sequences: 37544
Number of extensions: 400947
Number of successful extensions: 955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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