Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_I04
         (882 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    89   1e-17
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    75   5e-13
BC119640-1|AAI19641.1|  340|Homo sapiens alpha-1,4-N-acetylgluco...    32   2.4  
BC119639-1|AAI19640.1|  340|Homo sapiens alpha-1,4-N-acetylgluco...    32   2.4  
AF141315-1|AAD48406.1|  340|Homo sapiens alpha-1,4-N-acetylgluco...    32   2.4  

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 9/173 (5%)
 Frame = +3

Query: 291 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAG------GNPTLATEIPQPYYSNMGTSE 452
           Y ++             RL+E    +VLL+EAG      G+  L+ +I  P        +
Sbjct: 41  YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVRAGSKRLSWKIHMPAALVANLCD 100

Query: 453 D---WAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNE 623
           D   W YHTE Q G       +   WPRG+V GGSSS+N M YVRG+  DY+ W   G  
Sbjct: 101 DRYNWCYHTEVQRGL----DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGAR 156

Query: 624 GWSFEDVLPYFKKSXSFMGKFDAEATKYHSXGGYLSVXSDDNMHEIXXLIIKA 782
           GW +   LPYF+K+       +  A++Y    G L V      H +    ++A
Sbjct: 157 GWDYAHCLPYFRKAQG----HELGASRYRGADGPLRVSRGKTNHPLHCAFLEA 205


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 74.5 bits (175), Expect = 5e-13
 Identities = 34/88 (38%), Positives = 47/88 (53%)
 Frame = +3

Query: 519 WPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFKKSXSFMGKFDAEA 698
           WPRG+V GGSSS+N M YVRG+  DY+ W   G  GW +   LPYF+K+       +  A
Sbjct: 10  WPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQG----HELGA 65

Query: 699 TKYHSXGGYLSVXSDDNMHEIXXLIIKA 782
           ++Y    G L V      H +    ++A
Sbjct: 66  SRYRGADGPLRVSRGKTNHPLHCAFLEA 93


>BC119640-1|AAI19641.1|  340|Homo sapiens
           alpha-1,4-N-acetylglucosaminyltransferase protein.
          Length = 340

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +1

Query: 466 ILNHRKGLV-VPTKTRDALGHVVRCSVEAAASI 561
           +L+HR+G+V + T  R    H+V CSVE+AA I
Sbjct: 45  LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77


>BC119639-1|AAI19640.1|  340|Homo sapiens
           alpha-1,4-N-acetylglucosaminyltransferase protein.
          Length = 340

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +1

Query: 466 ILNHRKGLV-VPTKTRDALGHVVRCSVEAAASI 561
           +L+HR+G+V + T  R    H+V CSVE+AA I
Sbjct: 45  LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77


>AF141315-1|AAD48406.1|  340|Homo sapiens
           alpha-1,4-N-acetylglucosaminyltransferase protein.
          Length = 340

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +1

Query: 466 ILNHRKGLV-VPTKTRDALGHVVRCSVEAAASI 561
           +L+HR+G+V + T  R    H+V CSVE+AA I
Sbjct: 45  LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,997,041
Number of Sequences: 237096
Number of extensions: 2151425
Number of successful extensions: 7604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7603
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)