Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_I04
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   125   6e-31
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  125 bits (301), Expect = 6e-31
 Identities = 68/188 (36%), Positives = 94/188 (50%)
 Frame = +3

Query: 276 LEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSED 455
           + D +YDFI             RLSE+S+WKVLL+EAG +     EIP      +G   D
Sbjct: 64  IPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDEPAGAEIPSNLQLYLGGDLD 123

Query: 456 WAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSF 635
           W Y+T  +  AC +     C WPRGK LGG++  + M Y RG++ DY+ W   G  GWS+
Sbjct: 124 WKYYTTNESHACLS-TGGSCYWPRGKNLGGTTLHHGMAYHRGHRKDYERWVQQGAFGWSW 182

Query: 636 EDVLPYFKKSXSFMGKFDAEATKYHSXGGYLSVXSDDNMHEIXXLIIKAAVXLXLXNLTD 815
           ++V+PY+ KS +   +     TKYH  GG ++V            I+KAA         D
Sbjct: 183 DEVMPYYLKSEN-NTELSRVGTKYHRSGGLMNVERFPYQPPFAWKILKAAEEAGFGVSED 241

Query: 816 CXGDXXIG 839
             GD   G
Sbjct: 242 LSGDRING 249


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 606 PIRRNRPCYLERK 568
           P+ RNRP YL  K
Sbjct: 153 PMNRNRPAYLASK 165


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 409 PRYRNLTTVIWAHQKTGLTILNHRKGLVVPTKTRDALGHVVRCSV 543
           P Y   T + +      + ++  R GL +   T+D L  VV+ ++
Sbjct: 211 PLYELSTIIFFLIPMLIILVVYTRMGLKIRNSTKDTLNSVVQGAI 255


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 307 SELVPPDRLSPIVLAKYL 360
           +E++PP  L+  +L KYL
Sbjct: 286 AEIIPPTSLTVPLLGKYL 303


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 554 AAASTEHLTTWPSASLVFVGTTSPFLWFSMVSP 456
           AAA T    ++P         +SP  +FS VSP
Sbjct: 73  AAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSP 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,034
Number of Sequences: 438
Number of extensions: 4101
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)