Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_I03
(884 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 61 9e-10
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 61 9e-10
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 61 9e-10
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 47 2e-05
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 42 8e-04
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 42 8e-04
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 42 8e-04
AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical ... 39 0.005
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 33 0.36
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 30 1.9
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 30 2.5
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 30 2.5
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 30 2.5
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical... 29 3.3
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 29 3.3
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 29 3.3
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 29 5.8
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 5.8
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 29 5.8
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 29 5.8
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 29 5.8
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 29 5.8
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 29 5.8
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 28 7.7
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 28 7.7
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 61.3 bits (142), Expect = 9e-10
Identities = 33/63 (52%), Positives = 39/63 (61%)
Frame = +1
Query: 649 PILVXCLSRADNPXLQFXTAWALTXIASGTSAQTNXVXXAGAAPVSLXPLXSPHDPVRDP 828
P+LV CLS D P LQF AWALT IASGTS QT V AGA P+ L L + V +
Sbjct: 111 PVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQ 169
Query: 829 ALW 837
++W
Sbjct: 170 SVW 172
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +3
Query: 522 LVMNAANAENPEAQLAAVQQCRKLLSCDXNPPIDELIAAGILP 650
L + AA + +P QL AVQQ RK+LS D NPPID+LI +GILP
Sbjct: 69 LTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILP 111
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +2
Query: 323 AKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEE 481
+ NR +KN K+ + +RNE V +RK+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKE-QIGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSE 53
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 61.3 bits (142), Expect = 9e-10
Identities = 33/63 (52%), Positives = 39/63 (61%)
Frame = +1
Query: 649 PILVXCLSRADNPXLQFXTAWALTXIASGTSAQTNXVXXAGAAPVSLXPLXSPHDPVRDP 828
P+LV CLS D P LQF AWALT IASGTS QT V AGA P+ L L + V +
Sbjct: 111 PVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQ 169
Query: 829 ALW 837
++W
Sbjct: 170 SVW 172
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +3
Query: 522 LVMNAANAENPEAQLAAVQQCRKLLSCDXNPPIDELIAAGILP 650
L + AA + +P QL AVQQ RK+LS D NPPID+LI +GILP
Sbjct: 69 LTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILP 111
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +2
Query: 323 AKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEE 481
+ NR +KN K+ + +RNE V +RK+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKE-QIGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSE 53
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 61.3 bits (142), Expect = 9e-10
Identities = 33/63 (52%), Positives = 39/63 (61%)
Frame = +1
Query: 649 PILVXCLSRADNPXLQFXTAWALTXIASGTSAQTNXVXXAGAAPVSLXPLXSPHDPVRDP 828
P+LV CLS D P LQF AWALT IASGTS QT V AGA P+ L L + V +
Sbjct: 20 PVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQ 78
Query: 829 ALW 837
++W
Sbjct: 79 SVW 81
Score = 34.7 bits (76), Expect = 0.089
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 591 LLSCDXNPPIDELIAAGILP 650
+LS D NPPID+LI +GILP
Sbjct: 1 MLSTDRNPPIDDLIGSGILP 20
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 326 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 499
+ R ++K+ +D +EMRR+R E V++RKN+R+E ++ R + + S EE + L
Sbjct: 10 EERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 326 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 499
+ R ++K+ +D +EMRR+R E V++RKN+R+E ++ R + + S EE + L
Sbjct: 10 EERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 332 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 454
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNI 60
Score = 35.5 bits (78), Expect = 0.051
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 655 LVXCLSRADNPXLQFXTAWALTXIASGTSAQTNXVXXAGAAPVSLXPLXSPHDPVRDPAL 834
LV LS +N +Q+ AWALT I SG++ QT AG + + + AL
Sbjct: 137 LVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQAL 195
Query: 835 W 837
W
Sbjct: 196 W 196
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 537 ANAENPEAQLAAVQQCRKLLSCDXNPPIDELIAAGIL 647
+N + + + + RK LS NPPIDE+I G+L
Sbjct: 98 SNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLL 134
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 332 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 454
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNI 60
Score = 35.5 bits (78), Expect = 0.051
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 655 LVXCLSRADNPXLQFXTAWALTXIASGTSAQTNXVXXAGAAPVSLXPLXSPHDPVRDPAL 834
LV LS +N +Q+ AWALT I SG++ QT AG + + + AL
Sbjct: 137 LVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQAL 195
Query: 835 W 837
W
Sbjct: 196 W 196
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 537 ANAENPEAQLAAVQQCRKLLSCDXNPPIDELIAAGIL 647
+N + + + + RK LS NPPIDE+I G+L
Sbjct: 98 SNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLL 134
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 332 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 454
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNI 60
Score = 35.5 bits (78), Expect = 0.051
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 655 LVXCLSRADNPXLQFXTAWALTXIASGTSAQTNXVXXAGAAPVSLXPLXSPHDPVRDPAL 834
LV LS +N +Q+ AWALT I SG++ QT AG + + + AL
Sbjct: 137 LVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQAL 195
Query: 835 W 837
W
Sbjct: 196 W 196
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 537 ANAENPEAQLAAVQQCRKLLSCDXNPPIDELIAAGIL 647
+N + + + + RK LS NPPIDE+I G+L
Sbjct: 98 SNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLL 134
>AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical
protein F23F1.5 protein.
Length = 322
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +2
Query: 332 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATT 508
R +KN K ++ +RR E T+E +KN R +T K RN+ T +E+ ++ + TT
Sbjct: 28 RYSQYKNLTKAAEQQAKRREE-TLERQKNGRFDTFMKLRNLAFDDVTSDEDDEQKIETT 85
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 32.7 bits (71), Expect = 0.36
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +2
Query: 287 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY 466
+ A ++ D+ + +M+V + A KD E R ++++ E R+ K EE +K +
Sbjct: 1033 QDADIERAEADEQRRKMNV-ERAKKD--EERAKKDKRDAEERRKKDEERAKKDKEDAKKA 1089
Query: 467 STDEEEIDK 493
D+E+IDK
Sbjct: 1090 KEDQEKIDK 1098
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 358 ACILEHMHAVFRLISRHFICARCLDTV 278
A ILE+M A+FR +S F+ +CLD +
Sbjct: 447 AFILENMSALFRRLSDEFVEDKCLDVI 473
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R YT N+ L +++I V DG L
Sbjct: 200 LEHSDCSFMVDNEAIYDICRRNLDLARPTYT-----NLNRLIAQVISSVTASLRFDGALN 254
Query: 175 SIFTKYSTILIKDGPFP 125
T++ T L+ P+P
Sbjct: 255 VDLTEFQTNLV---PYP 268
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 290 TASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRK-NKREETLQKRRNVPISY 466
TA +DK Q + H KNA D+ E +RR E+ E ++ + R + K N +
Sbjct: 807 TAISDKENRSQIEME-HKLKNAESDLQEAKRRAEEIGAEKKELSDRLNEMLKNLNQSMQK 865
Query: 467 STDEEEI 487
S + +++
Sbjct: 866 SAENDKM 872
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 290 TASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRK-NKREETLQKRRNVPISY 466
TA +DK Q + H KNA D+ E +RR E+ E ++ + R + K N +
Sbjct: 819 TAISDKENRSQIEME-HKLKNAESDLQEAKRRAEEIGAEKKELSDRLNEMLKNLNQSMQK 877
Query: 467 STDEEEI 487
S + +++
Sbjct: 878 SAENDKM 884
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R YT R+ +++SS I LR +G L
Sbjct: 201 LEHSDCTFMVDNEAIYDICRRNLDLARPTYTNLNRLVAQIISS--ITASLRF---EGALN 255
Query: 175 SIFTKYSTILIKDGPFP 125
T++ T L+ P+P
Sbjct: 256 VDLTEFQTNLV---PYP 269
>AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical
protein B0511.11 protein.
Length = 368
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 419 KREETLQKRRNVPIS--YSTDEEEIDKNLATTDL 514
K+E+ KR NVP++ YS + KN +TT L
Sbjct: 98 KKEDDKSKRENVPLTVVYSNPSISVSKNFSTTPL 131
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 302 DKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEE 481
DK + K + ++ D EM RRR + + K +++ +++R V S S DE+
Sbjct: 230 DKKKWKKNKAKRSKRDDSSDDDSEMERRRKKSKKSKKSKKFKKSEKRKRAVNDSSSDDED 289
Query: 482 EIDK 493
E +K
Sbjct: 290 EEEK 293
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R YT R+ +++SS I LR +G L
Sbjct: 173 LEHSDCTFMVDNEAIYDICRRNLDLARPTYTNLNRLVAQIISS--ITASLRF---EGALN 227
Query: 175 SIFTKYSTILIKDGPFP 125
T++ T L+ P+P
Sbjct: 228 VDLTEFQTNLV---PYP 241
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R +YT RI +++SS I LR DG L
Sbjct: 193 LEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSS--ITASLRF---DGALN 247
Query: 175 SIFTKYSTILIKDGPFP 125
++ T L+ P+P
Sbjct: 248 VDLNEFQTNLV---PYP 261
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 260 LCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQ 439
L V Y ++ S DK+ T + K R + ++ +R N V E K K+E+ +
Sbjct: 1205 LQVRVDYLLKLMSKDKVKTTEKKERKRKADDVPVGPEKKKRHTNNVPQEGEKKKKEKKEE 1264
Query: 440 K 442
K
Sbjct: 1265 K 1265
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R +YT N+ L +++ + DG L
Sbjct: 195 LEHSDCSFMVDNEAIYDICRRNLDIERPSYT-----NLNRLIGQIVSSITASLRFDGALN 249
Query: 175 SIFTKYSTILIKDGPFP 125
T++ T L+ P+P
Sbjct: 250 VDLTEFQTNLV---PYP 263
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R +YT N+ L +++ + DG L
Sbjct: 194 LEHSDCSFMVDNEAIYDICRRNLDIERPSYT-----NLNRLIGQIVSSITASLRFDGALN 248
Query: 175 SIFTKYSTILIKDGPFP 125
T++ T L+ P+P
Sbjct: 249 VDLTEFQTNLV---PYP 262
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R +YT RI +++SS I LR DG L
Sbjct: 193 LEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSS--ITASLRF---DGALN 247
Query: 175 SIFTKYSTILIKDGPFP 125
++ T L+ P+P
Sbjct: 248 VDLNEFQTNLV---PYP 261
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R +YT N+ L +++ + DG L
Sbjct: 195 LEHSDCSFMVDNEAIYDICRRNLDIERPSYT-----NLNRLIGQIVSSITASLRFDGALN 249
Query: 175 SIFTKYSTILIKDGPFP 125
T++ T L+ P+P
Sbjct: 250 VDLTEFQTNLV---PYP 263
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R +YT N+ L +++ + DG L
Sbjct: 195 LEHSDCSFMVDNEAIYDICRRNLDIERPSYT-----NLNRLIGQIVSSITASLRFDGALN 249
Query: 175 SIFTKYSTILIKDGPFP 125
T++ T L+ P+P
Sbjct: 250 VDLTEFQTNLV---PYP 263
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R +YT RI +++SS I LR DG L
Sbjct: 193 LEHSDCAFMVDNEAIYDICKRNLDVDRPSYTNLNRIISQVVSS--ITASLRF---DGALN 247
Query: 175 SIFTKYSTILIKDGPFP 125
++ T L+ P+P
Sbjct: 248 VDLNEFQTNLV---PYP 261
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 349 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 176
LEH F + + + IC R LD R +YT RI +++SS I LR DG L
Sbjct: 193 LEHSDCAFMVDNEAIYDICKRNLDVDRPSYTNLNRIISQVVSS--ITASLRF---DGALN 247
Query: 175 SIFTKYSTILIKDGPFP 125
++ T L+ P+P
Sbjct: 248 VDLNEFQTNLV---PYP 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,460
Number of Sequences: 27780
Number of extensions: 360599
Number of successful extensions: 1246
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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