Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_H24
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.076
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.13
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.54
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.54
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.6
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 8.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.076
Identities = 28/83 (33%), Positives = 28/83 (33%)
Frame = -1
Query: 865 GGLGGNXGXXXVSPXXGMERGXXGGRXRXAPGXGFXGGRXRGXWEXXFFSXGXPXVGGFF 686
GG GG G P G GG G G GG G G P GGF
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP--GGFG 248
Query: 685 GXXGGGXFVXXPPGXXXGXGXGG 617
G GG F P G G G G
Sbjct: 249 GGLGG--FGGGPGGFGGGPGGHG 269
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 525 GXPXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHPXXXP 647
G P P P P P PP AAPP P P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 30.3 bits (65), Expect = 0.41
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 525 GXPXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHP 635
G P P P P P PP AAPP P P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 531 PXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHPXXXP 647
P P P P P PP AAPP P P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 525 GXPXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHP 635
G P PPP P PP + APP P P
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +3
Query: 525 GXPXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHPXXXP 647
G P P P P P PP PP P P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +3
Query: 525 GXPXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHPXXXP 647
G P P P P PP A PP P P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Frame = +3
Query: 537 PPPPXXXXXXP-PXPGXTPPQXLXXXAAPPXPHPXXXP 647
PP P P P P TPP AP P P P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/42 (28%), Positives = 12/42 (28%)
Frame = +3
Query: 522 GGXPXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHPXXXP 647
G P P P P PP PP P P P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.54
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 531 PXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHP 635
P PPPP PP PP +APP P P
Sbjct: 1705 PTPPPPPMSVPPPPS---APPMPAGPPSAPPPPLP 1736
Score = 29.1 bits (62), Expect = 0.94
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 540 PPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHP 635
PPP P P PP L +AP P+P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.54
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +3
Query: 531 PXPPPPXXXXXXP-PXPGXTPPQXLXXXAAPPXPHPXXXPG 650
P PPPP P P P PP PP P P G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 522 GGXPXPPPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHPXXXP 647
G P PPPP PP P PP + P P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 522 GGXPXPPPPXXXXXXPPXPGXTPP 593
GG P PPPP P P PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +3
Query: 531 PXP-PPPXXXXXXPPXPGXTPPQXLXXXAAPPXPHPXXXPGG 653
P P PPP PP P P PP P P GG
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = +3
Query: 522 GGXPXPPPPXXXXXXPPXPGXTPPQXLXXXAAP-PXPHPXXXP 647
G PP P PP P P AAP P P P P
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Frame = +3
Query: 531 PXPPPPXXXXXXPP--XPGXTPPQXLXXXAAPPXP 629
P P PP PP P P + AAPP P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 525 GXPXPPPPXXXXXXPPXPGXTPP 593
G P PPPP P P PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 808 RGXXGGRXRXAPGXGFXGGRXRG 740
RG GGR GF GGR RG
Sbjct: 453 RGGFGGRGGFGGRGGFGGGRGRG 475
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = -1
Query: 916 GXXGGGXXXXXGEXCXXGGLGGNXGXXXVSPXXGMERGXXGGRXRXAPG-XGFXGGR 749
G GG G GG GG G G RG GGR G G GGR
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGAR-GGGRGGARGGRGGRGGARGGRGGSSGGR 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.147 0.525
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,782
Number of Sequences: 5004
Number of extensions: 14833
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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