Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H18
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   245   8e-66
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   1.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.7  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    27   2.7  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   8.3  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  245 bits (599), Expect = 8e-66
 Identities = 110/179 (61%), Positives = 133/179 (74%), Gaps = 1/179 (0%)
 Frame = +2

Query: 245 AXQTVGKXGPALLQDVNFLDEMSSFDRXRIPERVVHAKGAGAFGYFEVTHDITKYSAAKV 424
           A   VGK GP LLQD + +D    FDR RIPERVVHAKG+GAFG FE T DITKY+   +
Sbjct: 25  AAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFECTDDITKYTKHTM 84

Query: 425 FESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPT 604
           F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+KFYTD+G++D+VGNNTP+FF+RDP 
Sbjct: 85  FSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVGNNTPVFFLRDPA 144

Query: 605 LFPSFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGD-RGIPDGYRHMNGYGS 778
            FP FIHTQKRNP   +KD  MFWD L+   E+IHQ++ LF D  G P  YR M+G+ S
Sbjct: 145 KFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMILFSDLGGTPYSYRFMDGFSS 203


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 587 FIRDPTLFPSFIHTQKRNPATHLKDP 664
           +++DPTL P F+HT  R   T   +P
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNP 531


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 527 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 402
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 730 RPWYS*WLQTYEWIWFHTFK-LVXSQGVGYWGTXHYK 837
           RPW         W+W H F+ L+ ++GV Y+ T  ++
Sbjct: 180 RPWKESITTAVRWVW-HAFRILLITRGVPYFSTAWFQ 215


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 501 VSADPLSPPTVENLTAIGVLLPMDSNTL 418
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,559
Number of Sequences: 5004
Number of extensions: 67860
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)