Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_H18
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 210 1e-54
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 208 5e-54
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 202 2e-52
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 31 1.2
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 1.6
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 30 2.1
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 29 6.6
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 8.7
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 210 bits (512), Expect = 1e-54
Identities = 94/174 (54%), Positives = 124/174 (71%)
Frame = +2
Query: 254 TVGKXGPALLQDVNFLDEMSSFDRXRIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 433
TVG GP LL+D + ++++++FDR RIPERVVHA+GA A G+FEVTHDIT + A +
Sbjct: 33 TVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITHLTCADFLRA 92
Query: 434 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFP 613
G +TP+ VRFSTV E GS +T+RDPRGFA+KFYT +G WDLVGNN P+FFIRD FP
Sbjct: 93 PGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVGNNFPVFFIRDGMKFP 152
Query: 614 SFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGDRGIPDGYRHMNGYG 775
+H+ K NP +H+++ D + PE++H +LF D GIP YRHM+G G
Sbjct: 153 DMVHSLKPNPKSHVQENWRILDFFSHHPESLHMFTFLFDDIGIPADYRHMDGSG 206
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 208 bits (508), Expect = 5e-54
Identities = 94/174 (54%), Positives = 123/174 (70%)
Frame = +2
Query: 254 TVGKXGPALLQDVNFLDEMSSFDRXRIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 433
TVG GP LL+D + +++++ F R RIPERVVHA+GA A G+FE THD+T + A S
Sbjct: 45 TVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFECTHDVTDITCADFLRS 104
Query: 434 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFP 613
G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G WDL+GNN P+FFIRD FP
Sbjct: 105 PGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFP 164
Query: 614 SFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGDRGIPDGYRHMNGYG 775
IH K NP +H+++ +D L+ PE++H +LF D GIP YRHM+G+G
Sbjct: 165 DVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHMDGFG 218
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 202 bits (494), Expect = 2e-52
Identities = 92/174 (52%), Positives = 123/174 (70%)
Frame = +2
Query: 254 TVGKXGPALLQDVNFLDEMSSFDRXRIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 433
TVG+ GP LL+D + +++++ FDR RIPERVVHA+GA A G+FEVTHDI+ + A +
Sbjct: 33 TVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRA 92
Query: 434 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFP 613
G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G +DLVGNN P+FFIRD FP
Sbjct: 93 PGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFFIRDGMKFP 152
Query: 614 SFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGDRGIPDGYRHMNGYG 775
+H K +P T++++ D + PE++H +LF D GIP YRHM G+G
Sbjct: 153 DMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYRHMEGFG 206
>04_04_1155 - 31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 31.1 bits (67), Expect = 1.2
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +2
Query: 278 LLQDVNFLDEMSSFDRXRI-PERVVHA--KGAGAFGYFEVTHDITKYSAAKV-FESIGKR 445
+L D N ++S F ++ ++ H K AG FGY + + + KV + G
Sbjct: 725 VLLDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-- 782
Query: 446 TPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTL 607
V T+ G DT+ + K Y + W+L NN P+ + DP L
Sbjct: 783 ---VVLLETLAGRPNYDDTLEED-----KIYIFEWAWELYENNNPLGIV-DPNL 827
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 602 LDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 477
+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 376 IDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>04_04_1157 - 31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +2
Query: 278 LLQDVNFLDEMSSFDRXRI-PERVVHA--KGAGAFGYFEVTHDITKYSAAKV-FESIGKR 445
+L D N ++S F ++ ++ H K AG FGY + + + KV + G
Sbjct: 761 VLIDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-- 818
Query: 446 TPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTL 607
V T+ G DT+ + K Y + W+L NN P+ + DP L
Sbjct: 819 ---VVLLETLAGRPNYDDTLEED-----KIYIFEWAWELYENNNPLGLV-DPKL 863
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 251 QTVGKXGPALLQDVNFLDEMSSFDRXRIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF- 427
+ +GK AL +D NF + SS D R+ E KG YF + + + A++
Sbjct: 33 EKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLLK 91
Query: 428 ESIG 439
E IG
Sbjct: 92 EQIG 95
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 575 YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 483
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,218,629
Number of Sequences: 37544
Number of extensions: 440002
Number of successful extensions: 1011
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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