Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H17
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    28   1.5  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    26   6.2  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   6.2  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   8.2  

>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 483 LVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQEXRVRCPSIARP 325
           L+  +  D  D DGP+V+PV  RA   PA      ++TS  +  V  P++  P
Sbjct: 36  LIEEDDEDTEDDDGPQVLPVH-RAP-SPAAFRKRGSITSMDQYLVNMPAVPSP 86


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -1

Query: 694 YAVIMLRVLDGVHXLQPLRPASYLV-VELPAGALRGN 587
           YAV +L +LD +H +   + ASY++ ++   G+++G+
Sbjct: 86  YAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGD 122


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 377 PLPPTRXRGSDVPVLQGLHVVGLDIPHELLAASVRPAEG 261
           PLP T    S+V +  G++ +  +  H+LL  SV    G
Sbjct: 113 PLPSTNASHSEVSLSAGVNDLNSNSEHDLLPKSVNKTPG 151


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 576 TDSSLPLRAPAGSSTTRYDAGLSGWRXWTPSRTRN 680
           TD S+PLRA +  S T Y + L      T +R+ N
Sbjct: 138 TDDSVPLRAVSTVSLTPYKSELPSGASTTQNRSPN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,268
Number of Sequences: 5004
Number of extensions: 52597
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)