Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_H16
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 279 3e-76
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 279 3e-76
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 279 3e-76
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 46 6e-06
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.7
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 8.4
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 279 bits (685), Expect = 3e-76
Identities = 124/173 (71%), Positives = 145/173 (83%)
Frame = +3
Query: 219 YAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKK 398
+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK
Sbjct: 33 FAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKN 92
Query: 399 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVXLPSG 578
A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRV LPSG
Sbjct: 93 AALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSG 152
Query: 579 AKKVLPSSNRGMVGIVAGGGRIDXPILKAGRAYHKYXVXRNCWPYVRGVAMNP 737
AKKV+PSS RG+VGIVAGGGRID P+LKAGRA+HKY V RNCWP RGVAMNP
Sbjct: 153 AKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +2
Query: 119 MGRVIRAQRKGAGSVFVSHTKKXKGAPKLRSL 214
MGRVIRAQRK +G +F +HT+ KGA +LR+L
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTL 31
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 784 ASTVXKGPSAGRKVGLIAARRTG 852
++TV + + G+KVGLIAARRTG
Sbjct: 221 STTVPRQSAPGQKVGLIAARRTG 243
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 279 bits (685), Expect = 3e-76
Identities = 124/173 (71%), Positives = 145/173 (83%)
Frame = +3
Query: 219 YAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKK 398
+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK
Sbjct: 33 FAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKN 92
Query: 399 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVXLPSG 578
A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRV LPSG
Sbjct: 93 AALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSG 152
Query: 579 AKKVLPSSNRGMVGIVAGGGRIDXPILKAGRAYHKYXVXRNCWPYVRGVAMNP 737
AKKV+PSS RG+VGIVAGGGRID P+LKAGRA+HKY V RNCWP RGVAMNP
Sbjct: 153 AKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +2
Query: 119 MGRVIRAQRKGAGSVFVSHTKKXKGAPKLRSL 214
MGRVIRAQRK +G +F +HT+ KGA +LR+L
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTL 31
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 784 ASTVXKGPSAGRKVGLIAARRTG 852
++TV + + G+KVGLIAARRTG
Sbjct: 221 STTVPRQSAPGQKVGLIAARRTG 243
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 279 bits (685), Expect = 3e-76
Identities = 124/173 (71%), Positives = 145/173 (83%)
Frame = +3
Query: 219 YAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKK 398
+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK
Sbjct: 33 FAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKN 92
Query: 399 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVXLPSG 578
A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRV LPSG
Sbjct: 93 AALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSG 152
Query: 579 AKKVLPSSNRGMVGIVAGGGRIDXPILKAGRAYHKYXVXRNCWPYVRGVAMNP 737
AKKV+PSS RG+VGIVAGGGRID P+LKAGRA+HKY V RNCWP RGVAMNP
Sbjct: 153 AKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +2
Query: 119 MGRVIRAQRKGAGSVFVSHTKKXKGAPKLRSL 214
MGRVIRAQRK +G +F +HT+ KGA +LR+L
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTL 31
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 784 ASTVXKGPSAGRKVGLIAARRTG 852
++TV + + G+KVGLIAARRTG
Sbjct: 221 STTVPRQSAPGQKVGLIAARRTG 243
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 46.4 bits (105), Expect = 6e-06
Identities = 33/111 (29%), Positives = 57/111 (51%)
Frame = +3
Query: 405 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVXLPSGAK 584
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 585 KVLPSSNRGMVGIVAGGGRIDXPILKAGRAYHKYXVXRNCWPYVRGVAMNP 737
+ + ++ +G+V+ + KAGR+ ++ R P VRG AMNP
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNP 265
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 631 PATIPTMPLLLDGRTFLAPDGSXTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 461
PAT+P F P +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 490 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 392
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,649
Number of Sequences: 5004
Number of extensions: 63737
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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