Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_H14
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    48   2e-06
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    31   0.21 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   2.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.6  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   6.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   6.0  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
 Frame = +2

Query: 377 EDCLYLNVFTPKLPSCDKLLPTMVSIHGGGFVLGNGIIKTENGPDFLIEHDVVVVFI--- 547
           EDCL+LN++ P      +  P +  IHGG   +GN +   +  P  L        FI   
Sbjct: 80  EDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFILVS 139

Query: 548 -NYRLGAFGFLS----LXIPEAAGNMGLKDQVMALKWVQENIQ 661
             +RL  FGFL+    L     + N G  DQ + L+W  ++I+
Sbjct: 140 PGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIE 182



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +3

Query: 609 WD*RIK*WLLSGSKKTFNKFCGXKDSVTIFGISAGSAS----VXYLXLSPSSXGLFXQAX 776
           WD R+    L  + K    F G K+++ + GISAGS S    + Y    P +  +  +A 
Sbjct: 168 WDQRLG---LEWTYKHIESFGGNKENIAVGGISAGSYSALFQLIYETYHPEANQIIKRAL 224

Query: 777 LXS-GSSLNHWAIE 815
           L S G S+   ++E
Sbjct: 225 LLSNGLSVQPKSVE 238


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 398 VFTPKLPSCDKLLPTMVSIHGGGFVLGNGIIKTEN--GPDFLIEHDVVVVFINYRL 559
           +F P   + +   P  +  HGGG+VLGN  I TEN        +   VVV ++YRL
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGN--INTENSFATHMCEQAKCVVVNVDYRL 141


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 467  FVLGNGIIKTENGPDFLIEHDVVVVFINY 553
            + +GN I KT+ G  FLI HD + + + Y
Sbjct: 1102 WAIGN-IGKTDQGITFLINHDTIPLIVKY 1129


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +2

Query: 578  SLXIPEAAGNMGLKDQVMALKWVQENIQQILWX*RQRN 691
            +L +  +  N  L+D+   LK++++N+Q++L    QRN
Sbjct: 1057 NLLLISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRN 1094


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 544 KYNDNIMFNKKVWSVFCLNYPISQDKTSSVYGHH 443
           KYN  I   +K+ +   LN  + + + SS Y HH
Sbjct: 425 KYNGLIQALQKLQTCMRLNDALIEQRLSSTYAHH 458


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -2

Query: 344  IENKHYSDLXEVASLSCSQDSGGCGXLNLNSPMGAFAYGICK 219
            + +K   +  E      +QDS  C   N+ S     AYG+ K
Sbjct: 887  VTDKDEKEKFETKKKELTQDSSFCKFQNIRSNFSQIAYGVSK 928


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 563 AFGFLSLXIPEAAGNMGLKDQVMALKWVQENIQQILWX*RQRNNIW 700
           AF F  + + E  G  G  D++ A+ W       ++W   Q  N W
Sbjct: 120 AFFFSWMTLAEGKGFRGAYDKLQAVFWPTLKANYMVWPFFQTVNFW 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,380
Number of Sequences: 5004
Number of extensions: 61324
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)